Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_D17
(887 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26594-1|CAA81348.1| 144|Homo sapiens T cell receptor beta chai... 33 1.4
X04932-1|CAA28596.1| 140|Homo sapiens protein ( Human mRNA for ... 33 1.4
U66060-1|AAC13323.1| 115|Homo sapiens V_segment translation pro... 33 1.4
U66059-28|AAC80199.1| 115|Homo sapiens V_segment translation pr... 33 1.4
BC110303-1|AAI10304.1| 312|Homo sapiens Unknown (protein for MG... 33 1.4
AJ004872-1|CAA06181.1| 309|Homo sapiens TCR beta chain protein. 33 1.4
AF043179-1|AAC08953.1| 313|Homo sapiens T cell receptor beta ch... 33 1.4
AF009663-2|AAB63900.1| 115|Homo sapiens TCRBV13S1 protein. 33 1.4
AF009662-1|AAC18429.1| 115|Homo sapiens TCRBV6S5 protein. 33 1.4
X74848-1|CAA52840.1| 140|Homo sapiens T-cell receptor beta chai... 31 4.2
X57721-1|CAA40888.1| 113|Homo sapiens TCR Vbeta 13.4b protein. 31 4.2
X57606-1|CAA40832.1| 113|Homo sapiens TCR Vbeta 13.4a protein. 31 4.2
U66060-4|AAC13326.1| 115|Homo sapiens V_segment translation pro... 31 4.2
S60794-1|AAB19723.1| 139|Homo sapiens T cell receptor variable ... 31 4.2
AY475217-1|AAS48057.1| 315|Homo sapiens T cell antigen receptor... 31 4.2
AF009663-5|AAB63901.1| 115|Homo sapiens TCRBV13S6 protein. 31 4.2
AF009662-4|AAC18430.1| 115|Homo sapiens TCRBV13S6 protein. 31 4.2
X75419-1|CAA53171.1| 98|Homo sapiens protein ( H.sapiens TCR V... 31 7.4
U66059-13|AAC80204.1| 115|Homo sapiens V_segment translation pr... 31 7.4
U07975-2|AAA50583.1| 113|Homo sapiens T cell receptor beta prot... 31 7.4
AF009663-11|AAB63902.1| 114|Homo sapiens TCRBV13S7 protein. 31 7.4
AF009660-2|AAC13346.1| 115|Homo sapiens V_segment translation p... 31 7.4
>Z26594-1|CAA81348.1| 144|Homo sapiens T cell receptor beta chain
variable region protein.
Length = 144
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>X04932-1|CAA28596.1| 140|Homo sapiens protein ( Human mRNA for
T-cell receptor beta-chain (clone HBVP34) (Family
Member: V beta 13.2, D beta 1.1, J beta 1.2, C beta 1).
).
Length = 140
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>U66060-1|AAC13323.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>U66059-28|AAC80199.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>BC110303-1|AAI10304.1| 312|Homo sapiens Unknown (protein for
MGC:117429) protein.
Length = 312
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>AJ004872-1|CAA06181.1| 309|Homo sapiens TCR beta chain protein.
Length = 309
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>AF043179-1|AAC08953.1| 313|Homo sapiens T cell receptor beta chain
protein.
Length = 313
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>AF009663-2|AAB63900.1| 115|Homo sapiens TCRBV13S1 protein.
Length = 115
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>AF009662-1|AAC18429.1| 115|Homo sapiens TCRBV6S5 protein.
Length = 115
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L L AGPVNAGV
Sbjct: 2 SIGLLCCAALSLLWAGPVNAGV 23
>X74848-1|CAA52840.1| 140|Homo sapiens T-cell receptor beta chain
protein.
Length = 140
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>X57721-1|CAA40888.1| 113|Homo sapiens TCR Vbeta 13.4b protein.
Length = 113
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>X57606-1|CAA40832.1| 113|Homo sapiens TCR Vbeta 13.4a protein.
Length = 113
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>U66060-4|AAC13326.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>S60794-1|AAB19723.1| 139|Homo sapiens T cell receptor variable
region beta chain protein.
Length = 139
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>AY475217-1|AAS48057.1| 315|Homo sapiens T cell antigen receptor
beta chain protein.
Length = 315
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>AF009663-5|AAB63901.1| 115|Homo sapiens TCRBV13S6 protein.
Length = 115
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>AF009662-4|AAC18430.1| 115|Homo sapiens TCRBV13S6 protein.
Length = 115
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SISLLCCAAFPLLWAGPVNAGV 23
>X75419-1|CAA53171.1| 98|Homo sapiens protein ( H.sapiens TCR V
Beta 13.2 gene (allele b). ).
Length = 98
Score = 30.7 bits (66), Expect = 7.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SLGLLCCAAFSLLWAGPVNAGV 23
>U66059-13|AAC80204.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 30.7 bits (66), Expect = 7.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCC V L AGPVNAGV
Sbjct: 2 SLGLLCCGVFSLLWAGPVNAGV 23
>U07975-2|AAA50583.1| 113|Homo sapiens T cell receptor beta
protein.
Length = 113
Score = 30.7 bits (66), Expect = 7.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SLGLLCCAAFSLLWAGPVNAGV 23
>AF009663-11|AAB63902.1| 114|Homo sapiens TCRBV13S7 protein.
Length = 114
Score = 30.7 bits (66), Expect = 7.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SLGLLCCAAFSLLWAGPVNAGV 23
>AF009660-2|AAC13346.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 30.7 bits (66), Expect = 7.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 120 SVFILCCAVLILNDAGPVNAGV 185
S+ +LCCA L AGPVNAGV
Sbjct: 2 SLGLLCCAAFSLLWAGPVNAGV 23
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,626,300
Number of Sequences: 237096
Number of extensions: 1255628
Number of successful extensions: 2620
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2620
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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