Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_D12
(937 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.2
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 31 1.2
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 1.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 692 GXVVXRXFFXXXPPGXGGNXXPPLGGGXXXPPPPXXXG 579
G + + F PP G PP G G PPPP G
Sbjct: 55 GQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAG 92
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 668 FXXXPPGXGG-NXXPPLGGGXXXPPPPXXXG 579
F PPG GG PP+ G PPPP G
Sbjct: 73 FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGG 103
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 571 KXHPXXXGGGGXXXPPPRGGXXFPPXPGG 657
K P GG G P RGG PP PGG
Sbjct: 158 KGPPGPPGGHGEPGPAGRGGPRGPPGPGG 186
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPP 594
PPG GG PP GG PPP
Sbjct: 183 PPGHGGQGGPPGHGGMGGPPP 203
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPP 594
PPG GG PP GG PPP
Sbjct: 463 PPGHGGQGGPPGHGGMGGPPP 483
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG+ PP G PPPP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG+ PP G PPPP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG+ PP G PPPP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPP 309
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG PP+ GG PPPP
Sbjct: 745 PPPPGG--LPPISGGPPPPPPP 764
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG PP+ GG PPPP
Sbjct: 729 PPPPGG--LPPITGGPPPPPPP 748
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG PP+ GG PPPP
Sbjct: 745 PPPPGG--LPPISGGPPPPPPP 764
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG PP+ GG PPPP
Sbjct: 729 PPPPGG--LPPITGGPPPPPPP 748
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 653 PGXGGNXXPPLGG-GXXXPPPPXXXG 579
PG G+ PP GG G PPPP G
Sbjct: 417 PGAPGSYGPPQGGPGGFGPPPPGGPG 442
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG PP+ GG PPPP
Sbjct: 328 PPPPGG--LPPISGGPPPPPPP 347
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 656 PPGXGGNXXPPLGGGXXXPPPP 591
PP GG PP+ GG PPPP
Sbjct: 312 PPPPGG--LPPITGGPPPPPPP 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.147 0.489
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,169,979
Number of Sequences: 27780
Number of extensions: 141478
Number of successful extensions: 744
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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