Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_D07
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    30   0.50 
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    27   2.7  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    27   4.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   4.6  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   6.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   8.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   8.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   8.1  

>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 687 EVTTASGMFEALCNHIKYATNKGNIR 764
           EV T++      CNH+ Y+++KGNI+
Sbjct: 226 EVITSAEFHPINCNHLMYSSSKGNIK 251


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 696 TASGMFEALCNHIKYATNKGNIRSAITIFPQRTDGKHDYXIWNPQLINY 842
           T+S   +A   H  +  N+G+I +A+ +F      K D        +NY
Sbjct: 485 TSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKNYLNY 533


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 ESVELKVDSNQKQVKPNLRIKVPQPIRLKNHVAHDENFDTLHSR 350
           E+ +L  D N+ ++     + V  P RL +H+ +DE+F   H R
Sbjct: 248 ETYQLNGDENECRID----VLVSTPGRLVDHIRNDESFSLQHLR 287


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +2

Query: 383 LRKSLSDKHYGYTWSR*YPADGGR--SVQGCSGIPHTILRFNQARELRSPQSEVRRSEEG 556
           +R+SLS  +Y        P    R  S    S IP+ +   NQA ++ SP S       G
Sbjct: 313 IRQSLSSTYYNSLSPNAVPVSSQRKYSASSYSAIPNAMSVSNQAFDVESPPSSYATPLTG 372

Query: 557 I 559
           I
Sbjct: 373 I 373


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 768 LNEYFLYS*RI*CDCTMLRTYRLLWSLLCNRISVTFSTVFFRCTWSHYAKPTWPRTP 598
           ++ + LY+ +    C  L    L ++LLC  I +   TV +        K  WPR P
Sbjct: 16  ISNFILYNRKYRKSCA-LAFLTLRYTLLCYSIPIHIHTVNYLAFTIARMKRVWPRIP 71


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 775 RSSHN---APTVNMTTEYGIRSLSIMQDTRSXMEAY 873
           + SHN    P+ +  T+  I SLS++ DT+S    Y
Sbjct: 103 QQSHNLPSTPSADAETQRNIGSLSVLDDTKSQYANY 138


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 822  SIFXSHVYRRCVVGRSLLLNEYFLYS*RI*CDCT 721
            S +   ++++C VG SLL+ E  L      C+CT
Sbjct: 1248 SFYRKSIHKKCRVGSSLLVKEEVLSK----CECT 1277


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 700 QAVCSKHCAITSNTLRIKEIFVQQ 771
           ++VC K+  ITS  + ++EIF+ Q
Sbjct: 210 KSVCLKNAEITSICMAVREIFLSQ 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,171
Number of Sequences: 5004
Number of extensions: 72101
Number of successful extensions: 236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)