Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_D07
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    30   1.9  
AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF016677-8|AAB66140.3|  310|Caenorhabditis elegans Hypothetical ...    30   2.5  
AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.      28   7.6  
AC006708-14|AAT81172.1|  273|Caenorhabditis elegans Metaphase-to...    28   7.6  
AC006708-13|AAF60415.1|  788|Caenorhabditis elegans Metaphase-to...    28   7.6  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 8/171 (4%)
 Frame = +3

Query: 210  FSGESVELKVDSNQKQVKPNLRIKVPQPIRLKNHVAHD--ENFDTLHSRINEV------T 365
            F+ E  E K D  Q ++  N+ I       LK    HD   NF     R+  V       
Sbjct: 2220 FTKELQERKDDMVQLEMAKNMIIP-----SLKGDAHHDLRRNFSDTAKRVAMVRDELSDA 2274

Query: 366  HFNTKCSEKVCQTSIMDIPGRGDTPRTAEEVFKDAQAFLTQYYASIKRENSEAHKARLDE 545
            H     S   C T   DI       + A +V + A         +  REN E     +  
Sbjct: 2275 HKWVATSRDTCDTFWADIDS---LEQLARDVVRRANGIRMAVIYTPSRENVEGVLRDVQR 2331

Query: 546  VKRELKEKGTYQLKTSELVFGAKLAWRNATRCIGRIQWKKLQIFDCREVTT 698
            +K  + +    +++T+ L    KLA +NA R +  +      I DC ++ T
Sbjct: 2332 LKMSIGDVKK-RVQTANLPPAIKLAGKNAKRVVQVLTETATTIADCHDIPT 2381


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 8/171 (4%)
 Frame = +3

Query: 210  FSGESVELKVDSNQKQVKPNLRIKVPQPIRLKNHVAHD--ENFDTLHSRINEV------T 365
            F+ E  E K D  Q ++  N+ I       LK    HD   NF     R+  V       
Sbjct: 2220 FTKELQERKDDMVQLEMAKNMIIP-----SLKGDAHHDLRRNFSDTAKRVAMVRDELSDA 2274

Query: 366  HFNTKCSEKVCQTSIMDIPGRGDTPRTAEEVFKDAQAFLTQYYASIKRENSEAHKARLDE 545
            H     S   C T   DI       + A +V + A         +  REN E     +  
Sbjct: 2275 HKWVATSRDTCDTFWADIDS---LEQLARDVVRRANGIRMAVIYTPSRENVEGVLRDVQR 2331

Query: 546  VKRELKEKGTYQLKTSELVFGAKLAWRNATRCIGRIQWKKLQIFDCREVTT 698
            +K  + +    +++T+ L    KLA +NA R +  +      I DC ++ T
Sbjct: 2332 LKMSIGDVKK-RVQTANLPPAIKLAGKNAKRVVQVLTETATTIADCHDIPT 2381


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 8/171 (4%)
 Frame = +3

Query: 210  FSGESVELKVDSNQKQVKPNLRIKVPQPIRLKNHVAHD--ENFDTLHSRINEV------T 365
            F+ E  E K D  Q ++  N+ I       LK    HD   NF     R+  V       
Sbjct: 2220 FTKELQERKDDMVQLEMAKNMIIP-----SLKGDAHHDLRRNFSDTAKRVAMVRDELSDA 2274

Query: 366  HFNTKCSEKVCQTSIMDIPGRGDTPRTAEEVFKDAQAFLTQYYASIKRENSEAHKARLDE 545
            H     S   C T   DI       + A +V + A         +  REN E     +  
Sbjct: 2275 HKWVATSRDTCDTFWADIDS---LEQLARDVVRRANGIRMAVIYTPSRENVEGVLRDVQR 2331

Query: 546  VKRELKEKGTYQLKTSELVFGAKLAWRNATRCIGRIQWKKLQIFDCREVTT 698
            +K  + +    +++T+ L    KLA +NA R +  +      I DC ++ T
Sbjct: 2332 LKMSIGDVKK-RVQTANLPPAIKLAGKNAKRVVQVLTETATTIADCHDIPT 2381


>AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.3 protein.
          Length = 281

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 489 YYASIKRENSEAHKARLDEVKRELKEKGTYQLKTSELVFGAKLAWR-NATRCIGRIQWKK 665
           Y  +I +  ++A++    + ++ELK    +  + SEL+   ++ WR  A + + +   +K
Sbjct: 216 YAMAIDKPVNDAYRLFKRDYEKELKSASEWDSRVSELMEREQITWRQQAVKKLKQQDHEK 275

Query: 666 LQIFD 680
           + IFD
Sbjct: 276 MAIFD 280


>AF016677-8|AAB66140.3|  310|Caenorhabditis elegans Hypothetical
           protein ZK1240.1 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 405 SIMDIPGRGDTPRTAEEVFKDAQAFLTQYYASIKRENSEAHKARLDEVKRELKEKGT 575
           +I ++     T +   +VF+D +  ++ YY SI RE  +A +A  ++  RE+ E  +
Sbjct: 163 NIEEVDSAQQTNQVDGKVFQDKKDLISVYYTSI-RETLDAQEALANQKLREIAESNS 218


>AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 459 FKDAQAFLTQYYASIKRENSEAHKARLDEVKRELKEKGTYQLKTSELVFGAKLAWRNATR 638
           F DA      +Y + K  NSE+     D + R  K++  Y L +S  + GA+L +     
Sbjct: 42  FDDAIFLAELHYETDKSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGARLFY----- 96

Query: 639 CIGRIQWKKLQIFDCR 686
            + R+ +   +I DCR
Sbjct: 97  LLARVSYDLNKIDDCR 112


>AC006708-14|AAT81172.1|  273|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform b protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 459 FKDAQAFLTQYYASIKRENSEAHKARLDEVKRELKEKGTYQLKTSELVFGAKLAWRNATR 638
           F DA      +Y + K  NSE+     D + R  K++  Y L +S  + GA+L +     
Sbjct: 42  FDDAIFLAELHYETDKSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGARLFY----- 96

Query: 639 CIGRIQWKKLQIFDCR 686
            + R+ +   +I DCR
Sbjct: 97  LLARVSYDLNKIDDCR 112


>AC006708-13|AAF60415.1|  788|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform a protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 459 FKDAQAFLTQYYASIKRENSEAHKARLDEVKRELKEKGTYQLKTSELVFGAKLAWRNATR 638
           F DA      +Y + K  NSE+     D + R  K++  Y L +S  + GA+L +     
Sbjct: 42  FDDAIFLAELHYETDKSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGARLFY----- 96

Query: 639 CIGRIQWKKLQIFDCR 686
            + R+ +   +I DCR
Sbjct: 97  LLARVSYDLNKIDDCR 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,589,922
Number of Sequences: 27780
Number of extensions: 406705
Number of successful extensions: 1068
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)