Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_D06
         (937 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0176 - 23329589-23331043                                         31   1.00 
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   4.0  
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579     29   7.0  
07_01_0080 + 587674-588510                                             29   7.0  

>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 804 GXXXITPPXRYPKSGVXSFAPXXXGLXKPPXPXPXXGPL 920
           G   ++PP  YP S   + +P    L   P P P  GPL
Sbjct: 47  GFLPLSPPSHYPTSPPKTPSPGHSALSPSPPPPPRRGPL 85


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/59 (33%), Positives = 21/59 (35%)
 Frame = +3

Query: 741 PLXXPSPLXXXLSAXXPSGKGGXXXITPPXRYPKSGVXSFAPXXXGLXKPPXPXPXXGP 917
           P   P PL        PS         PP   PK    + AP   GL  PP P P  GP
Sbjct: 205 PPPPPPPLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAP---GLPLPPPPPPPPGP 260


>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
          Length = 824

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 463 PAXPWRGDXGGXPXXQPPXPG 401
           P+ P  GD GG P   PP PG
Sbjct: 2   PSLPNSGDEGGAPPPTPPPPG 22


>07_01_0080 + 587674-588510
          Length = 278

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/62 (27%), Positives = 19/62 (30%)
 Frame = +2

Query: 395 PPXGXXGLAXXXPSXIPPPXTXGXXXXGRGPPXSXPPXXGXRXXXXPGXXPGXNX*ANGX 574
           P  G  G+    P   PPP + G       PP   PP             P  N    G 
Sbjct: 80  PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPPPLFTRRSHAPQDNSSGTGV 139

Query: 575 PR 580
           PR
Sbjct: 140 PR 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,919
Number of Sequences: 37544
Number of extensions: 224437
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)