Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_D05
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 34 0.030
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 2.0
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 27 2.6
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom... 27 3.5
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 3.5
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 8.0
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 8.0
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.030
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 145 KGWGCGYRTLQTICSWLK 198
+GWGCG+R +Q + SWL+
Sbjct: 38 RGWGCGWRNIQMLISWLQ 55
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = -3
Query: 461 STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHGTSNSLSITKQTSKLPIHCLEPI 282
+TSPPI + + + +ST+V S+P+ +++ ++ S T + PI +
Sbjct: 1651 NTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVL 1710
Query: 281 NVLDLSSKSTSID 243
N + ST ++
Sbjct: 1711 NSSTPITSSTVVN 1723
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -3
Query: 461 STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHGTSNSLSITKQTSKLPIHCLEPI 282
+TS PI + + + +ST+V S+P+ +L+ ++ S T S PI +
Sbjct: 559 NTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPITSSSVL 618
Query: 281 NVLDLSSKSTSID 243
N + ST+++
Sbjct: 619 NSSTPITSSTALN 631
Score = 26.2 bits (55), Expect = 6.1
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = -3
Query: 461 STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHG----TSNSL--SITKQTSKLPI 300
+TS PI + + + +ST+V S+P+ +L+ TS+S+ S T TS +
Sbjct: 1363 NTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVV 1422
Query: 299 HCLEPINVLDLSSKSTSID*ISRIEGTATSI 207
+ PI + + ST I S + T+T I
Sbjct: 1423 NTSTPITSSTVVNSSTPIT-SSTVVNTSTPI 1452
Score = 26.2 bits (55), Expect = 6.1
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = -3
Query: 461 STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHG----TSNSL--SITKQTSKLPI 300
+TS PI + + + +ST+V S+P+ +L+ TS+S+ S T TS +
Sbjct: 2203 NTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVV 2262
Query: 299 HCLEPINVLDLSSKSTSID*ISRIEGTATSI 207
+ PI + + ST I S + T+T I
Sbjct: 2263 NTSTPITSSTVVNSSTPIT-SSTVVNTSTPI 2292
Score = 25.8 bits (54), Expect = 8.0
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = -3
Query: 461 STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHG----TSNSL--SITKQTSKLPI 300
+TS PI + + + +ST+V S+P+ L+ TS+S+ S T TS +
Sbjct: 2335 NTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVV 2394
Query: 299 HCLEPINVLDLSSKSTSID*ISRIEGTATSI 207
+ PI + + ST I S + T+TSI
Sbjct: 2395 NTSTPITSSSVLNSSTPIT-SSTVVNTSTSI 2424
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/81 (20%), Positives = 38/81 (46%)
Frame = -3
Query: 485 PMIPLDEQSTSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHGTSNSLSITKQTSKL 306
P+ L ++S PI + + + +ST+V S+P+ +++ ++ S T +
Sbjct: 2567 PITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 2626
Query: 305 PIHCLEPINVLDLSSKSTSID 243
PI +N + ST+++
Sbjct: 2627 PITSSSVLNSSTPITSSTALN 2647
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = -3
Query: 461 STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHGTSNSLSITKQTSKLPIHCLEPI 282
+TS PI + + + +ST+V S+P+ +++ ++ S T S PI +
Sbjct: 2779 NTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVL 2838
Query: 281 NVLDLSSKSTSID 243
N + ST+++
Sbjct: 2839 NSSTPITSSTALN 2851
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = -3
Query: 461 STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHGTSNSLSITKQTSKLPIHCLEPI 282
+TS PI + + + +ST+V S+P+ +++ ++ S T + PI +
Sbjct: 3259 NTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVL 3318
Query: 281 NVLDLSSKSTSID 243
N + ST+++
Sbjct: 3319 NSSTAITSSTALN 3331
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 358 IIHINKGDDLKTIVDALVKHFIEYS 432
++ +G+DLK ++DAL+ +E+S
Sbjct: 566 MVENGQGEDLKRVIDALLNRAVEFS 590
>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 568 VDNFYVVVFQHSVDRPPINWHH 503
V N Y+V+F+ SVD+ + HH
Sbjct: 76 VSNNYIVMFKPSVDKSKLEQHH 97
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/87 (20%), Positives = 39/87 (44%)
Frame = +1
Query: 109 SLIPNVVNNFTFKGWGCGYRTLQTICSWLKLNHMDVAVPSIREIQSILVDLEDKSKTFIG 288
+L V + +G GY L++I + K + AVP++ I I + + + I
Sbjct: 455 TLTQAVQQDTLISSFGVGYTQLKSIFPFAKWLQ-EAAVPNMASINDIGISRVYRRRIAIF 513
Query: 289 SRQWIGSFEVCLVIDKLFDVPCKIIHI 369
QWI +++ ++ + C +++
Sbjct: 514 LSQWIEDSSSEQLLEVIYKLYCSFLNL 540
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 494 LETMVPVYWWSIHTMLENNHVKIIYKTMA 580
LET +H +L N+VK+IY+T A
Sbjct: 547 LETFFAYIVHLLHGVLNRNNVKLIYETAA 575
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -3
Query: 431 LYSMKCLTKASTIVLRSSPLFI*IILHGTSN-SLSITK--QTSKLPIHCLEPINVLDLSS 261
L ++ L+ A+ + L S+ + + G +N +LS T ++LP+H L + LD+S
Sbjct: 240 LQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSLADVAELPVHTLHKLTFLDISE 299
Query: 260 KS 255
+
Sbjct: 300 NN 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,447
Number of Sequences: 5004
Number of extensions: 65304
Number of successful extensions: 230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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