Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C23
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    29   0.072
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.39 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 0.072
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 QLSKPSNFGDEFVLRSVDWLENLPWHDGNIVKTQK 207
           +L  P N   E+ L  VDWL+N+ W   +  K  K
Sbjct: 96  RLRLPENMTSEYRLLEVDWLKNM-WRPDSFFKNAK 129


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 103 QLSKPSNFGDEFVLRSVDWLENLPWHDGNIVKTQK 207
           +L  P N  +++ +  VDWL N+ W      K  K
Sbjct: 65  RLRLPENMSEDYRILDVDWLHNI-WRPDCFFKNAK 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,039
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)