Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C22
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    28   1.6  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   3.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   6.3  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 390 SLDFIKQGKYCSELVVRGS 334
           +LD++KQGKY SE +  GS
Sbjct: 55  ALDWLKQGKYSSEWIAMGS 73


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 171 QGFADAVAKTTTNKKNMILVKFILIFLXKAGFE 73
           QGF ++VA     K+N +L K++  F   AG+E
Sbjct: 203 QGFLESVASFLNRKENSLL-KYMRAFFQVAGYE 234


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 254 YRRHRRTRADDGISRPRHGALDFLEEVXKVSLMRSRKQQ-RTRKI 123
           +R+HR      GI  P   A    EE  +   +R  KQQ + RKI
Sbjct: 619 FRKHRAIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMKERKI 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,644
Number of Sequences: 5004
Number of extensions: 42714
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)