Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C21
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   2.1  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    27   3.6  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   4.8  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   6.3  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    26   6.3  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   8.3  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 454 FSCAYRGPCV*IWSIDEKPHSSNVL 380
           F C  +GPC+ I+ + E  H S+++
Sbjct: 30  FLCCAQGPCLRIYDVSESRHESDLI 54


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 308 IRPEWFLRNYFKSKCCQ--VPPLXQHEHVARMWLFVY-TPNLH 427
           I  +W +R+Y    C Q  +P   Q + + R  L ++  PNLH
Sbjct: 146 INEQWSMRSYVSKNCIQMKIPASNQRKTLLRDVLKIFDEPNLH 188


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 445 RMRSNCINYPSLLPQRQLLNRIP*TLYVCRKYKLL 549
           ++ S+ ++Y SL+P+R ++  +P   Y    YK++
Sbjct: 187 KLPSHVLSYHSLIPRRMIVTVLPVLRYATSIYKVI 221


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 173 KSRLNCPEESLRKDHVCSPVSSLSGFNYMF---SQSMYEDLEEHLPVEIRP 316
           K  L  P ESL  +H     + L+  NY+    + ++ E LEE  P  + P
Sbjct: 94  KRLLVVPNESLMDNHQVELATKLASMNYLVTCSTSNLVEGLEELYPKILTP 144


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 378 MSTLLECGFSSILQIYTHGPRYAHEKQLHKLPVAVATTSTP---KSDSINVVRLPEVQTP 548
           + ++L  G+S ++ I+T     +  K LHKL      +  P    +  + ++   E QTP
Sbjct: 569 LPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTP 628


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 462 HKLPVAVATTSTPKSDSINVVRLPEVQTPDVDITNLDPL 578
           HKLPV  +T S  KSD         V   D+  T+ DPL
Sbjct: 241 HKLPVIASTGSACKSDP------TRVNIADISATSEDPL 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,521,567
Number of Sequences: 5004
Number of extensions: 74176
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)