Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C21
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    31   1.6  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    30   2.9  
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592...    29   3.8  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    29   6.6  
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    28   8.7  

>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 580 TAATCRSSSSLRGGHNATSV*IGTTEIG*VSTLATAPPPRRLRFPQPNPKH*EIYGHSSK 759
           TAA   +S+++  G ++ S+   T  +   +T    P P R   P   P+H  I    S 
Sbjct: 196 TAAVASASAAVFSGVSSLSIAAATARVEVAATPCWMPSPARFTTPSATPRHHIITTKPSS 255

Query: 760 LR 765
           LR
Sbjct: 256 LR 257


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 447 HEKQLHKLPVAVATTSTPKSDSINVVRLPEVQTPDVDITNLD 572
           HEKQLH L  A+    T  +D IN V  P  + P +     D
Sbjct: 739 HEKQLHALANALLERETLTADEINKVVHPYQEEPQLSFQEED 780


>08_02_1473 -
           27358162-27358275,27358968-27359024,27359102-27359245,
           27359770-27359934,27360020-27360208,27360301-27360535,
           27360826-27360932,27361020-27361103,27361185-27361695,
           27361793-27361854,27363373-27363456
          Length = 583

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 375 NMSTLLECGF-SSILQIYTHGPRYAHEKQLHKLPVAVATTSTPKSDS 512
           N  +LL+ GF      +Y  GP   H +++ ++ V V   +TP   S
Sbjct: 82  NPFSLLDQGFLERAAAVYGEGPHITHPREVRRIDVEVKDNNTPAGSS 128


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 584 LRHVGVHPAFVEDTMQLPFKLGQQKSAKYRH*PRRRHHADSGSHNQTQSTKRF 742
           LR+VG H +       LP  +G Q         R++ H D  S  ++ S ++F
Sbjct: 770 LRYVGDHGSTSTSKFNLPKNMGDQNMEGNVSNKRQKGHKDKASSEKSNSDEKF 822


>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 511 ESDLGVDVVATATGSLCSCFSCAYRGP 431
           ++D GVDV A   GSLC   S  +RGP
Sbjct: 46  DTDAGVDVDARLVGSLCRVLS-DFRGP 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,108,227
Number of Sequences: 37544
Number of extensions: 499182
Number of successful extensions: 1307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)