Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C21
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    34   0.12 
AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    29   4.5  
U42843-3|AAM75365.1|  310|Caenorhabditis elegans Skinhead protei...    28   7.8  
U42843-2|AAM75366.1|  533|Caenorhabditis elegans Skinhead protei...    28   7.8  
U42843-1|AAA83594.2|  623|Caenorhabditis elegans Skinhead protei...    28   7.8  
AF125442-7|AAD12796.1|  203|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 456 QLHKLPVAVATTSTPKSDSINVVRLPEVQTPDVDITNLDPLDCCDMSEFIQPSWRT 623
           Q   LPV+  ++ST  S    + R+P +  PDV    LD  +C D    + PS  T
Sbjct: 212 QFDTLPVSFRSSSTSSSTG-GLPRIPNIPVPDVPFIPLDDDNCYDEIMLVTPSSNT 266


>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/51 (33%), Positives = 32/51 (62%)
 Frame = +2

Query: 197 ESLRKDHVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNYFKSK 349
           E L+ +H  S V SL+   YMFS++ YE L+    ++++P   L +Y++++
Sbjct: 392 EKLKLEHK-SYVESLNDLKYMFSEAQYELLDS---LDVKPR-ALCDYYRAR 437


>U42843-3|AAM75365.1|  310|Caenorhabditis elegans Skinhead protein
           1, isoform b protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -3

Query: 631 LHCVLHEGWMNSDMSQQSRGSRFVISTSGVCTSGRRTTFMESDLGVDVVATATGSL 464
           L  V+  G ++ D S QS G    +S   + +SGR+     S   V V ATAT SL
Sbjct: 93  LQAVVSNGQIDYDHSYQSTGQT-PLSPLIIGSSGRQQQTQTSPGSVTVTATATQSL 147


>U42843-2|AAM75366.1|  533|Caenorhabditis elegans Skinhead protein
           1, isoform c protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -3

Query: 631 LHCVLHEGWMNSDMSQQSRGSRFVISTSGVCTSGRRTTFMESDLGVDVVATATGSL 464
           L  V+  G ++ D S QS G    +S   + +SGR+     S   V V ATAT SL
Sbjct: 316 LQAVVSNGQIDYDHSYQSTGQT-PLSPLIIGSSGRQQQTQTSPGSVTVTATATQSL 370


>U42843-1|AAA83594.2|  623|Caenorhabditis elegans Skinhead protein
           1, isoform a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -3

Query: 631 LHCVLHEGWMNSDMSQQSRGSRFVISTSGVCTSGRRTTFMESDLGVDVVATATGSL 464
           L  V+  G ++ D S QS G    +S   + +SGR+     S   V V ATAT SL
Sbjct: 406 LQAVVSNGQIDYDHSYQSTGQT-PLSPLIIGSSGRQQQTQTSPGSVTVTATATQSL 460


>AF125442-7|AAD12796.1|  203|Caenorhabditis elegans Hypothetical
           protein H04M03.11 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 204 CVKITSVHPCRHFLDSITCSHKVCTKIWRSIYLLKFVLNG 323
           C  + S H C HF   +  +H+   +  +S Y L ++L G
Sbjct: 23  CQTVPSGHACEHFCSVLKTAHENYNR--KSSYFLHYILGG 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,694,502
Number of Sequences: 27780
Number of extensions: 427374
Number of successful extensions: 1093
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)