Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_C18
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 83 7e-17
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 67 3e-12
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 52 1e-07
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 31 0.22
SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.2
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 6.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 8.4
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 82.6 bits (195), Expect = 7e-17
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 3/189 (1%)
Frame = +2
Query: 182 RILIDHDGGADDSLXIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRR 361
+I+ID D G DD++ A+ E +++G+TT GNV N+ ++L +A R
Sbjct: 2 KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57
Query: 362 DVPIYRGCSEPLIGGSVSDFYFGNDGLGDLENVEYQSIAAEKEHAVFRIIE-LSKLYPGN 538
D+P+Y G ++PL+ ++ + + + S + HAV II+ L PG
Sbjct: 58 DIPVYAGSNKPLLRAPITATHVHGASGFEGAVLPPPSRKENEGHAVDFIIDTLRNNEPGT 117
Query: 539 LEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYSDDYKEP--EFNVDMDVEAYHIV 712
+ I IGPLTNIA+A+ P + R ++V+ AG P EFN+ +D A +V
Sbjct: 118 ITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAAEFNIYVDPHAAQMV 177
Query: 713 TRSASPDIV 739
S P ++
Sbjct: 178 LSSGIPIVM 186
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 67.3 bits (157), Expect = 3e-12
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 3/184 (1%)
Frame = +2
Query: 185 ILIDHDGGADDSLXIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRD 364
I ID D G DD + AL K++G++T HGN + N+ ++ + N+ D
Sbjct: 19 IWIDCDPGHDDVV----ALTLAACAGHCKILGVSTVHGNTTLEFTTKNALAVMELLNQ-D 73
Query: 365 VPIYRGCSEPLIGGSV-SDFYFGNDGLGDLENV-EYQSIAAEKEHAVFRIIELSKLYPGN 538
V ++ G ++PL+ S + G +GL + + +Y A + AVF + YP
Sbjct: 74 VDVHAGAAKPLMRESAFATHIHGTNGLAGISLLPDYPKKKATPD-AVFAMYTTISNYPEP 132
Query: 539 LEIIAIGPLTNIAMAVKIDPFFLSRLSRLV-IGAGYIYSDDYKEPEFNVDMDVEAYHIVT 715
+ ++A GPLTNIA+ + P + R + +G + + EFNV D EA +V
Sbjct: 133 VTLVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNITSQAEFNVYADPEAARLVL 192
Query: 716 RSAS 727
+ S
Sbjct: 193 ETKS 196
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 52.0 bits (119), Expect = 1e-07
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Frame = +2
Query: 179 ARILIDHDGGADDSLXIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANR 358
++++ID+DG D L + AL +++ ++G+T +G+ D + +L N
Sbjct: 25 SKVIIDNDGLTD--LQVLFALQAKQQ-----ILGVTAIYGDYTLDDSLFLASDVLSTGNL 77
Query: 359 RD-VPIYRGCSEPLIGGS----VSDFYFGNDGLGDLENVEYQSIAAEKEHAVFR------ 505
+P + G ++PL+ + + +G+ EY++ E ++
Sbjct: 78 TYCIPSFAGAAQPLLRTNNTFQIWQELYGSYVWQGYWQPEYETANTNNESYIYNTQISAA 137
Query: 506 --IIELSKLYPGNLEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYS 652
II++ K P + I+A GP+TN+A+A+ I P LVI GY+ S
Sbjct: 138 QFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDS 188
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 31.1 bits (67), Expect = 0.22
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +2
Query: 350 ANRRDVPIYRGCSEPLIGGSVSDFYFGNDGLGDLENVEYQSIAAEKEHAVFRIIELSKLY 529
AN +PI GC P + GS Y ND G + +S V I+EL ++Y
Sbjct: 554 ANGLTIPIVHGCKRPAMPGS----YQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVY 609
Query: 530 PGNLEIIAIGPL 565
G ++ +AIG L
Sbjct: 610 AG-ID-VAIGTL 619
>SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 89
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = -3
Query: 642 YPAPITRRDSRLRKNGSIFTAIAILVKGPIAIISKLPGYNFDSSIIRKTACSFSAAML 469
+PAP+ +++ R + + + +L KGPI +S + ++ + I C F + +
Sbjct: 15 FPAPLEKKEKREKGKIRNISFLIVLTKGPIWKVSSMESTSY-NGCIENLDCKFRKSFI 71
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 227 IFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEPLIGG 406
+ +ALL +KF GP V+ + + ++D + V Q + P+YR + L G
Sbjct: 599 LISALLEADKFKGPSVVLAYLPYHSADDDAITV-LQETKKAVDIGYWPLYR-WTPALEDG 656
Query: 407 SVSDF 421
SDF
Sbjct: 657 EYSDF 661
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -2
Query: 778 IQPCSDLRERQYGDYIRACAS----CHDVVCFDIHIHIELWFF 662
++P R + YG Y+ A C DVV F++ ++E W F
Sbjct: 1504 LRPILGDRSKTYGVYLAGVAHFLFVCVDVVVFEVLGYLEGWSF 1546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,626
Number of Sequences: 5004
Number of extensions: 74248
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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