Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_C18
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical... 93 3e-19
U23139-5|AAN65330.1| 374|Caenorhabditis elegans Hypothetical pr... 91 1e-18
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 31 1.1
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical pr... 29 3.4
AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guany... 29 3.4
U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical pr... 29 6.0
>AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical
protein Y43F8C.13 protein.
Length = 338
Score = 92.7 bits (220), Expect = 3e-19
Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Frame = +2
Query: 170 VTEARILIDHDGGADDSLXIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGV 349
V + +++ID DG +DD I AL + + +++ T HG V DQ N +R +
Sbjct: 3 VDKVKLVIDSDGVSDDVRAISLALQHPKA----EILAFTAVHGCVTVDQACANIKRTIRA 58
Query: 350 ANRRDVPIYRGCSEPLIG----GSVSDFYFGNDGLGD----LENVEYQSIAAEKEHAVFR 505
+R ++P+Y+G ++ ++ +VSDF FG DG+GD VE E +HA
Sbjct: 59 NDRSNIPVYKGAAKSILSLPKDDTVSDF-FGIDGIGDKPEEFPKVERSDFEGEGKHASLA 117
Query: 506 IIELSKLYPGNLEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYS----DDYKEPE 673
+I++ + + ++ IGPLTN+A+A+++ F + SRLVI G Y+ D E
Sbjct: 118 LIDILR-ENRDATLVTIGPLTNVAIALQLCEEFSTYPSRLVIMGGNYYAVGNVDGGSSAE 176
Query: 674 FNVDMDVEAYHIVTRSASPDIVTILPF 754
+N D EA IV R I TI+P+
Sbjct: 177 YNFHGDPEAASIVLRRMKCPI-TIVPW 202
>U23139-5|AAN65330.1| 374|Caenorhabditis elegans Hypothetical
protein F13H8.3 protein.
Length = 374
Score = 91.1 bits (216), Expect = 1e-18
Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 12/192 (6%)
Frame = +2
Query: 182 RILIDHDGGADDSLXIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRR 361
+++ID DG DD + AL + +VI +TT HG V +Q N R+L +
Sbjct: 24 KLIIDTDGVYDDIRGLTIALTNQNV----EVIAITTVHGGVTANQSAANVARLLRAIGKH 79
Query: 362 DVPIYRGCSEPLIGG---SVSDFYFGNDGLGDLENVEYQSI-----AAEKEHAVFRIIEL 517
+VP++ G + L+ V + FG+DG+G + +VE +++ +A+ +AV II L
Sbjct: 80 NVPVFIGAQDSLVPKGPIQVWEELFGSDGIGGVPDVEPKTLPSDFNSAQVGNAVDAIINL 139
Query: 518 SKLYPGNLEIIAIGPLTNIAMAVKIDPFFLSRLSRLVI-GAGYI---YSDDYKEPEFNVD 685
+K ++ ++ +GPLTNIAMA++ DP R+ ++VI G Y+ + EFN
Sbjct: 140 TK-STKDIILVGLGPLTNIAMAIRKDPDISKRVKQVVIMGGNYLGVGNTQFNSTAEFNFL 198
Query: 686 MDVEAYHIVTRS 721
MD EA HIV S
Sbjct: 199 MDPEAAHIVLSS 210
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical protein
ZK688.5b protein.
Length = 1595
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 273 TFGPLNFSSYSSAVNIXKESSAPPSWSMRILASVTSLIR 157
TF P F ++ N+ S+ PP W +R + S T R
Sbjct: 921 TFAPAGFPLMMASSNVPSTSAGPPGWPIRQVVSPTPTTR 959
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical protein
ZK688.5a protein.
Length = 1620
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 273 TFGPLNFSSYSSAVNIXKESSAPPSWSMRILASVTSLIR 157
TF P F ++ N+ S+ PP W +R + S T R
Sbjct: 921 TFAPAGFPLMMASSNVPSTSAGPPGWPIRQVVSPTPTTR 959
>Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical
protein F57F5.2 protein.
Length = 945
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -2
Query: 184 SGFGDVINSSFRFTAEKKK*LNQIHEYSRIHFCKNK---YFCRS 62
+G+GD++N R ++ K L+ IHEY R + K + ++C+S
Sbjct: 80 NGYGDLMNVMGRRFSDFIKGLDNIHEYFRFSYPKLRAPSFYCKS 123
>Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical
protein F57F5.2 protein.
Length = 945
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -2
Query: 184 SGFGDVINSSFRFTAEKKK*LNQIHEYSRIHFCKNK---YFCRS 62
+G+GD++N R ++ K L+ IHEY R + K + ++C+S
Sbjct: 80 NGYGDLMNVMGRRFSDFIKGLDNIHEYFRFSYPKLRAPSFYCKS 123
>AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guanylyl
cyclase GCY-33 protein.
Length = 945
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -2
Query: 184 SGFGDVINSSFRFTAEKKK*LNQIHEYSRIHFCKNK---YFCRS 62
+G+GD++N R ++ K L+ IHEY R + K + ++C+S
Sbjct: 80 NGYGDLMNVMGRRFSDFIKGLDNIHEYFRFSYPKLRAPSFYCKS 123
>U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical protein
C18H2.4 protein.
Length = 934
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +2
Query: 227 IFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEPLIGG 406
++ ++L E+K N P ++ + TTHG V ++L N+ S P +
Sbjct: 828 VYASILIEDKTNYPTLVSIITTHGG-----TIVVDPKVLSNLNQG--------SHPYLHS 874
Query: 407 SVSDFYFGNDGLGDL 451
++ F+ +DG DL
Sbjct: 875 NLGSFFIIHDGRPDL 889
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,626,241
Number of Sequences: 27780
Number of extensions: 408030
Number of successful extensions: 1163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -