Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C16
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    29   6.7  
12_01_0378 - 2946916-2947590                                           28   8.8  
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841...    28   8.8  

>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 58   LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 216
            LG    +T+Q    + +    +W + +L +P ++   W   + IASS  +T +
Sbjct: 1059 LGGFASTTIQLLGIVAVMSKVTWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 72  GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 212
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>01_03_0206 -
           13783169-13783651,13783761-13783903,13783962-13784128,
           13784641-13785149,13786031-13786312,13786397-13786792,
           13787232-13787504
          Length = 750

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 584 NVTNTWYWESALTGTATIWPSESTASIVSE-PSGYXQPAKYDNDVLFYIYN 733
           ++ N W+W   + GTAT    +  + +V    +G     K  +D+ F+I N
Sbjct: 534 SMQNNWFWFEKVVGTATPEKDQQDSKVVWRFSTGDVLTVKLGDDLNFHIRN 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,702,212
Number of Sequences: 37544
Number of extensions: 383252
Number of successful extensions: 1064
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)