Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C13
         (1437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.93 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   8.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.93
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -3

Query: 1324 GXGXGGGGGXXXXXGGGGXXAAXXXAGGGGG 1232
            G G    GG      GG         GGGGG
Sbjct: 21   GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 887 PGXXXXPXAXRXXXPPXGGXXPPXGGGXXXPP 982
           P     P A +   PP     PP GG    PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 3.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 931  PXXGAXPPPXGGXXXPPGGXXAXPP 1005
            P  G+ P P  G   PPGG    PP
Sbjct: 34   PQRGSPPNPSQGP--PPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 491 PPPXXXPPPPPGA 529
           PP    PPPPP +
Sbjct: 338 PPKPAPPPPPPSS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.151    0.536 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,291
Number of Sequences: 438
Number of extensions: 13408
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 50186334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)