Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C09
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    28   2.0  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   3.6  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   4.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   8.2  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   8.2  

>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = +3

Query: 471 IDDYQKFLDDLAKNKKVELDEIKKKL-TTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTG 647
           I DY+  L+D+ K K+V+L   +  L   C   G      + P  +     +    K+ G
Sbjct: 121 IHDYEISLEDMFKGKEVKLRATRNTLCPRCQGRGGKRFAKEKPCLSCDGKGVKQHLKHVG 180

Query: 648 SHR----QRFDETGKGKGIAGR 701
            H     Q   +T  GKG++ R
Sbjct: 181 PHHVTNSQVICDTCNGKGVSFR 202


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +3

Query: 507 KNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQ 659
           K+KK E++++++K+T   +P +     K+ +A +     T  S+ +  H++
Sbjct: 120 KDKKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVETPETIESEASVDHKE 170


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 450 LKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAA-AAVDRLT 626
           ++S K  + +  K  D+L K K  EL  +KK +    +  +  HV +  AA  +   ++ 
Sbjct: 69  IRSSKQTLINKVKAQDELLKKKVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIV 128

Query: 627 DTSKY 641
           D  KY
Sbjct: 129 DEKKY 133


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 404 WKENNNNGHGYSLQ 445
           WKE NNNG G+ ++
Sbjct: 640 WKEANNNGRGWKIK 653


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 368 LRERDGFSIGLGISKFGKRLEGFL 297
           L   D F++ + +SK GK   GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,411
Number of Sequences: 5004
Number of extensions: 70371
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)