Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C09
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    36   0.033
07_01_0161 + 1132505-1132704,1132839-1134075                           30   2.8  
06_01_0892 - 6827510-6827590,6829348-6830412                           29   6.6  
01_06_0751 + 31690411-31690443,31692900-31694240                       28   8.7  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 28/103 (27%), Positives = 49/103 (47%)
 Frame = +3

Query: 381 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 560
           M+ A  I  +    TD ++  +  K +K   D+  + +D   K + +E DE+++++  C 
Sbjct: 142 MEAALEISSRWPRVTDASL-LRWRKKLKRTSDECSQIMDR-CKRRAMEDDEMEQEVRQCA 199

Query: 561 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKG 689
            P   +H TKS  ++    +  D S  T S  QRF+    G G
Sbjct: 200 FPKRIAHATKSFISSFTGQKKVD-SLITTSTIQRFERFANGAG 241


>07_01_0161 + 1132505-1132704,1132839-1134075
          Length = 478

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 24/101 (23%), Positives = 48/101 (47%)
 Frame = +3

Query: 381 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 560
           M+ A  I  +    TD ++  +  K +K   D+  + ++   K + +E DE+++++  C 
Sbjct: 121 MEAALEISSRWPPVTDASL-LRWRKKLKRTSDECSQVMER-CKRRAMEDDEMEQEVRQCA 178

Query: 561 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKG 683
            P   +H T+S  ++    +  D S  T S  Q+F+    G
Sbjct: 179 FPKRIAHATRSFLSSFTGQKKVD-SLITTSTIQKFERLADG 218


>06_01_0892 - 6827510-6827590,6829348-6830412
          Length = 381

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 633 SKYTGSHRQRFDETGKGKGIAGRKDLVD---GSGYVTGYQHKDTYNKSH 770
           S Y G  R++ +E   G G  GRK  V+   GSGY T  Q +++Y   +
Sbjct: 144 SGYGGGGRKQQEEESYGSGY-GRKPQVEESYGSGYGTKPQQEESYGSGY 191


>01_06_0751 + 31690411-31690443,31692900-31694240
          Length = 457

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +3

Query: 429 TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 608
           TAI F  ++  +LG D   K +D L +N K  +DE+  +      P   S  T+ P    
Sbjct: 164 TAIRFYDVQD-RLGYDRPSKAVDWLMRNAKAAIDELPDRAEAPPPPAAAS--TEQP---E 217

Query: 609 AVDRLTDTS 635
           A ++ T TS
Sbjct: 218 ATEQATSTS 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,098,726
Number of Sequences: 37544
Number of extensions: 473887
Number of successful extensions: 1377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)