Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_C04
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 266 4e-72
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 263 3e-71
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 4e-05
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.87
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 2.0
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 6.1
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.1
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 8.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 266 bits (651), Expect = 4e-72
Identities = 127/184 (69%), Positives = 144/184 (78%)
Frame = +3
Query: 192 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 371
+G K L ME YV+KRR+DG H+INL +TWEKLVLAAR + IENPADV VISSRP+G
Sbjct: 28 IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87
Query: 372 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 551
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VNIPV
Sbjct: 88 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147
Query: 552 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 731
IALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FY
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFY 207
Query: 732 RDPE 743
RDPE
Sbjct: 208 RDPE 211
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 137 VLALNEEDVTKMLAATTHLGAENV 208
VL ++D+ +LAA +H+G++N+
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNL 33
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 263 bits (644), Expect = 3e-71
Identities = 123/184 (66%), Positives = 144/184 (78%)
Frame = +3
Query: 192 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 371
+G K L M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENPADV V+S+R +G
Sbjct: 27 IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86
Query: 372 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 551
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VNIPV
Sbjct: 87 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146
Query: 552 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 731
IALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FY
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFY 206
Query: 732 RDPE 743
RDPE
Sbjct: 207 RDPE 210
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 125 GGLDVLALNEEDVTKMLAATTHLGAENV 208
G ++L +ED+ ++LAA H+G++N+
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNL 32
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 43.6 bits (98), Expect = 4e-05
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Frame = +3
Query: 222 ETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQR-AVLKFAAH 398
+ ++Y +R +G H+I+L +T L A V +I + + GQ+ +V+ A
Sbjct: 72 QPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAAAKR 130
Query: 399 TGATPIAGRFTPGAFTN--QIQA----------------------AFREPRLLIVLDPAQ 506
I R+ PG TN ++Q ++ P L+++L+P +
Sbjct: 131 ARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPLE 190
Query: 507 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 659
+ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 191 NKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.87
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -1
Query: 742 SGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 626
+ S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 100 TSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 261 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 437
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +3
Query: 396 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 560
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 561 CNTDSPLRFVDIAIPCNTKSSHSI 632
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 712 WLICSSTVTLKXSEKDEQQAREQAVVQLTRSSCXC 816
+++CS ++T ++KDE++ E +LT+ S C
Sbjct: 876 FVLCSDSLTTIVTDKDEKEKFETKKKELTQDSSFC 910
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 524 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 345
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 344 EHISGVLDG 318
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 630 IGLMWWLLAREVLRLRGVLPRDQRWD 707
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 92 NAYNATGRRNGLKEVKILRIPYSRQR 15
+A+N RR G+KE KIL+ +S+ +
Sbjct: 236 SAFNLRKRRKGVKEKKILKTYHSQDK 261
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +3
Query: 135 TCSPSTRKMSPKCLLQPPILGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAV 314
TC ++S + P+LG + S + T++ RA+G + + T + A V
Sbjct: 443 TCVMLFSRVSTIAVTVSPVLG---IISSIITWLVVARAEGGKTLTIETTGANNPMLAGNV 499
Query: 315 VAIENPADVFVISSRPFGQR 374
V + +PA +I S F ++
Sbjct: 500 VGLLSPALYILILSIIFPEK 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,770,280
Number of Sequences: 5004
Number of extensions: 81974
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -