Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_C04
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 257 1e-68
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 257 1e-68
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.5
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.5
06_03_0543 + 21967787-21970261 29 6.5
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 257 bits (629), Expect = 1e-68
Identities = 121/200 (60%), Positives = 148/200 (74%), Gaps = 1/200 (0%)
Frame = +3
Query: 147 STRKMSPKCLLQPPI-LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAI 323
S R+ + +L + LG K ME YVYKRR DG ++INL +TWEKL LAAR +VAI
Sbjct: 13 SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72
Query: 324 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 503
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 504 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 683
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192
Query: 684 LPRDQRWDVVVDLFFYRDPE 743
+ +WDV+VDLFFYRDPE
Sbjct: 193 ILPGHKWDVMVDLFFYRDPE 212
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 140 LALNEEDVTKMLAATTHLGAENVNFQ 217
L+ E+D+ MLAA HLG +N +FQ
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQ 37
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 257 bits (629), Expect = 1e-68
Identities = 118/184 (64%), Positives = 143/184 (77%)
Frame = +3
Query: 192 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 371
LG K ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 372 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 551
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 552 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 731
IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208
Query: 732 RDPE 743
RDPE
Sbjct: 209 RDPE 212
Score = 34.7 bits (76), Expect = 0.099
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 107 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 217
++A G L+ E+DV MLAA HLG +N +FQ
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 207 TFSAPRWVVAASILVTSSSLRASTSNP 127
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 386 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 493
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 636 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 725
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 390 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 235
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,527,641
Number of Sequences: 37544
Number of extensions: 617415
Number of successful extensions: 1507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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