Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C03
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    29   3.8  
05_05_0325 + 24109469-24109665,24110284-24110400,24110497-241109...    29   5.0  
01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988...    28   8.7  

>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 793 YYSMLXYCKLTIIICNSLIREICIRINLTKHINYNNFNFLK 671
           Y  ++ YC LT     S   E C  I L   + YN +NF++
Sbjct: 590 YELLVPYCLLTNQSFLSKASENCFNITLALFLTYNTYNFVE 630


>05_05_0325 +
           24109469-24109665,24110284-24110400,24110497-24110914,
           24110997-24111416
          Length = 383

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 217 CTMSNIEPAHDLLDKVILRQLDLLEQKIKCELNI 318
           C MSNI PA   +  VI R   L  +K++C+  I
Sbjct: 87  CAMSNILPAMTFVMAVIFRMEKLELKKVRCQAKI 120


>01_01_1222 +
           9877607-9877691,9879235-9879390,9880070-9880148,
           9881471-9881711,9881794-9881868,9881960-9882094,
           9882634-9882821,9882915-9882983,9883060-9883150,
           9883262-9883396,9883675-9883740,9883823-9883935,
           9884020-9884110
          Length = 507

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 541 QNLHMAQKIFQTTLSYVVECSNIQLQLEENMK 636
           QN  + Q+ +QTTL  + E  N +L  + N+K
Sbjct: 165 QNFSLLQEFYQTTLKALEEAKNERLWFKTNLK 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,881,012
Number of Sequences: 37544
Number of extensions: 318648
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)