Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_C01
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.85 
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    28   1.5  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   1.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   3.4  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   4.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   4.5  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   6.0  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 532 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 374
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 695 YAVIMLRVLDGVHVLQPLRPASYLV-VELPAGALRGN 588
           YAV +L +LD +HV+   + ASY++ ++   G+++G+
Sbjct: 86  YAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGD 122


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 485 LVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQEXRVRCPSIARP 327
           L+  +  D  D DGP+V+PV  RA   PA      ++TS  +  V  P++  P
Sbjct: 36  LIEEDDEDTEDDDGPQVLPVH-RAP-SPAAFRKRGSITSMDQYLVNMPAVPSP 86


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 27/115 (23%), Positives = 48/115 (41%)
 Frame = -2

Query: 601 LSEAMSCRCATAR*SPARWPRSTPQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*V 422
           +S+A S   +++R S +    S+P RS+ R  +S   + S V+  P  + P+   + P  
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTRSAFRPKTS-ETVSSEVVSSPPTS-PLHSPVKPVS 367

Query: 421 CAPTCSQPEPSYTLPLPPTRXRGSDVPVLQGLHVVGLDIPHELLAASVRPAEGCD 257
                   E   ++P+P  +   S  PVL G  +    +       + RP    D
Sbjct: 368 NEQVEQVTEVELSIPVPSIQEAESQKPVLTGSSMRRPSVTSPTFEVAARPLTSMD 422


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = -2

Query: 583 CRCATAR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 428
           CR AT    P      T Q        S+ R A++     + + ++P  N  P D +   
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588

Query: 427 *VCAPTCSQPEPSY 386
            VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 577 TDSSLPLRAPAGSSTTRYDAGLSGWRTWTPSRTRN 681
           TD S+PLRA +  S T Y + L    + T +R+ N
Sbjct: 138 TDDSVPLRAVSTVSLTPYKSELPSGASTTQNRSPN 172


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 379 PLPPTRXRGSDVPVLQGLHVVGLDIPHELLAASVRPAEG 263
           PLP T    S+V +  G++ +  +  H+LL  SV    G
Sbjct: 113 PLPSTNASHSEVSLSAGVNDLNSNSEHDLLPKSVNKTPG 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,590
Number of Sequences: 5004
Number of extensions: 58911
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)