Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_B17
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.64 
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    28   1.5  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    28   2.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.4  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   7.9  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   7.9  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 256 NDCFTDEECLLSVNSLRQHHMLLAGFKDLGYSFV 357
           N  FTDE+  + V  LRQ +++L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 566  GHQQLINTLSPGAVLQSEIESWPHWLDNARKVL 664
            GHQ L+N     A L S+++S+  +++ A + L
Sbjct: 1328 GHQSLLNLREKRAFLDSQLKSYNEYIEQAMETL 1360


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 115 TPKIIETVQPTSLQPVLD 62
           +PK++ETVQ T +QP +D
Sbjct: 246 SPKLLETVQSTIIQPTID 263


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 401 ISVLTHCTTIIYP*GSVSLETLXEKLPTQQALQAVQD--FLACGVENNLLTEDYHVVGHQ 574
           I+    C+ +IYP G+ +L T           +AV +  F+AC      +  DYH  GH 
Sbjct: 206 IAARNGCSVMIYP-GAFNLSTGPLHWELLARARAVDNEMFVACCAPARDMNADYHSWGHS 264

Query: 575 QLIN 586
            +++
Sbjct: 265 TVVD 268


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 25/95 (26%), Positives = 41/95 (43%)
 Frame = -3

Query: 365 PPATNE*PKSLNPARSI*CCRREFTLSKHSSSVKQSLDTVCCITTKSIGLFRGCLRRDSV 186
           P      P+  NP        +EF L K+  S+ Q    V  + T+S+G+    +     
Sbjct: 424 PSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSILQKWPAVKSLPTESVGI-DVVMEPKLQ 482

Query: 185 PLHSVMGISPHSDAAFRVPKLTKNTKNNRDGATNI 81
           P  SV    P  D    +P + +++ +NRD  T+I
Sbjct: 483 P--SVKEKKPTKDLQSPLPSVEEDS-SNRDKKTDI 514


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 407 PIWFHPAPS*IFPLPPATNE*PKSLNPARS 318
           P +  PAP    PLPP T   P+   P RS
Sbjct: 37  PAFMEPAPVSKKPLPPPTRRLPRKPLPFRS 66


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = +1

Query: 226 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQ-HHMLLAGFKDLGYSFVAG 363
           +L ++ + + NDCFT  E   CL    LS N L +        F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 449 VSLETLXEKLPTQQALQAVQDFLACGVENNLLTED-YHVVGHQQLINTLSPGAVLQSEIE 625
           + +E L EK+   QAL   +DF    +E +L   D   V   ++L N  +    L S I 
Sbjct: 331 IEIEVLREKVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRIS 390

Query: 626 SWPHWLD 646
              H ++
Sbjct: 391 ELEHTIE 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,477
Number of Sequences: 5004
Number of extensions: 64186
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)