Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_B17
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0214 + 12713865-12713973,12715780-12716011,12716556-127166...    35   0.096
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    30   2.7  
03_01_0185 - 1485023-1485733                                           29   6.3  

>04_03_0214 +
           12713865-12713973,12715780-12716011,12716556-12716635,
           12716930-12717083,12717213-12717291,12717654-12717738,
           12718420-12718466,12720123-12720281
          Length = 314

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
 Frame = +2

Query: 389 RDGTISVLTHCT-TIIYP*GSVSLETLXEKLPTQQALQAVQDFLACGVENNLLTEDYHVV 565
           ++G + ++   + ++ YP G +  + + ++    + L   Q  LA  + +NLL+      
Sbjct: 162 KEGRVVIVASVSYSLSYP-GGICFDKINDESGYNRFLAYGQSKLANILHSNLLSSHLKEQ 220

Query: 566 GHQQLINTLSPGAVLQSEIESWPHWLDNARKVLG*YFIYTTNRSSITI 709
             + ++N+L PGAV  + +  W   L  A + +G YF+    + + T+
Sbjct: 221 DAKVIVNSLHPGAVATNILHHWCP-LYGAIRAIGKYFVKGVEQGAATV 267


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +2

Query: 566 GHQQLINTLSPGAVLQSEIESWP----HW-LDNARKV 661
           GH  LI    PG +LQ E+E WP    HW L+ A K+
Sbjct: 85  GHSVLIRIAVPGLILQQELE-WPPSFNHWNLEQAPKL 120


>03_01_0185 - 1485023-1485733
          Length = 236

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 286 LSVNSLRQHHMLLAGFKDLGYSFVAG 363
           LS+NS R HH++L  F D+     AG
Sbjct: 187 LSLNSSRHHHLILRAFADVCEELFAG 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,417,322
Number of Sequences: 37544
Number of extensions: 432983
Number of successful extensions: 1063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)