Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_B13
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.17 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.67 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = -2

Query: 385 DHGGDRGVRPAERLSLEPFAHDRLRSVYHACIVSMLEGRPAGRRYNGESEARVHFRHY 212
           D  G R V P   L   PF  +  R   HA + S L   PAG  ++ +   R     Y
Sbjct: 47  DVPGLRQVLPNGNLVFPPFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQY 104


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 427 YGDSHRPDRSHLWIDHGGDRGVRPAERLSLEPFA 326
           +GD H    +   +D G D GVRPAE  S +P A
Sbjct: 1   FGDEHEYRLTKYLLD-GYDAGVRPAEN-SSQPLA 32


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 337 EPFAHDRLRSVYHACIV 287
           E  A+DRLR+ Y+ C +
Sbjct: 34  EILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 337 EPFAHDRLRSVYHACIV 287
           E  A+DRLR+ Y+ C +
Sbjct: 34  EILANDRLRNQYYDCFI 50


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 303 ITPVLYPCWKAD 268
           + PV+Y CW  D
Sbjct: 385 MNPVIYACWSRD 396


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -2

Query: 553 RSSLQSGRQEYQHVVEQQTAFSAVSVGNDSGDHTTNHAAGAVYGDSHRP 407
           R   Q  +Q+ Q   +QQ++   + VGN         +A A    S  P
Sbjct: 794 RQQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSP 842


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,224
Number of Sequences: 438
Number of extensions: 4984
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)