Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_B11
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homo...    31   1.4  
U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protei...    31   1.4  
Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    28   7.4  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   9.8  

>U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homolog
           protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 41  LICS-LESDRKRLLTK*NFSLCSQCACS-PPAPASWNYPRTA*ALLTKTSRTN 193
           L C  L+ D+K+     N S  SQ  CS PPA  S  + RTA   L KT R N
Sbjct: 58  LFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAHNELEKTRRAN 110


>U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protein 1
           protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 41  LICS-LESDRKRLLTK*NFSLCSQCACS-PPAPASWNYPRTA*ALLTKTSRTN 193
           L C  L+ D+K+     N S  SQ  CS PPA  S  + RTA   L KT R N
Sbjct: 58  LFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAHNELEKTRRAN 110


>Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1098.4 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 488 MRELPINYRGCPRAPKINRRVARQNRLRASGPDIKASAP 604
           +RE P+N    P+  K    V  +N L    PD+  +AP
Sbjct: 240 VREFPLNQADIPQEFKYRTSVIERNNLELEHPDVDYTAP 278


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 519 APEPRK*IAASPAKTASELPAQTSKPRHP 605
           APEP    A +PA  A+ +PAQ + P  P
Sbjct: 194 APEPAPEAAPAPAPEAAPVPAQDAAPAAP 222


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 374 KKYFPLSFRTHHGRKLRQAHLQKLQPR 454
           +++F L ++    +KLR+AHL+ +Q R
Sbjct: 129 EEWFRLKYKPDDAKKLREAHLENVQKR 155


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 212 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILL 78
           V++LL ++S R     L  SA S+ T   A S HIA  ++  ILL
Sbjct: 118 VQLLLCNISDRDIFVKLRCSAASNITALPAGSGHIAPKSQMRILL 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,447
Number of Sequences: 27780
Number of extensions: 280880
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)