Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_B06
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   1.2  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.7  

>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 HFVIRETKSKWPIMNRKPICLAWATHRLHKI 219
           HF IR  +S   + NR+ I L W T   HK+
Sbjct: 9   HFGIRTPRSVCHVRNRENIYLYWTTFDAHKL 39


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -3

Query: 743 LNLYITL*IKLCFYMYPQTHLDLFVLQGKKRYLF 642
           LNL I    KLC Y+Y   HLD  V   K  YLF
Sbjct: 183 LNLTIEA-SKLCIYLYEARHLDQ-VWDEKSTYLF 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,942
Number of Sequences: 5004
Number of extensions: 66416
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)