Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_B04
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   189   3e-50
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  189 bits (461), Expect = 3e-50
 Identities = 85/116 (73%), Positives = 99/116 (85%)
 Frame = +2

Query: 116 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 295
           MGRKF VGGNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +
Sbjct: 1   MGRKFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60

Query: 296 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHAL 463
           A QN +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHAL
Sbjct: 61  AGQNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHAL 116



 Score =  130 bits (314), Expect = 2e-32
 Identities = 59/82 (71%), Positives = 69/82 (84%)
 Frame = +1

Query: 580 DKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVXA 759
           + W+N+V+AYEPVWAIGTGKTATPQQAQ+VH  LRNW S NV+ +V++ VRI YGGSV A
Sbjct: 154 NSWDNVVVAYEPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETVRIIYGGSVTA 213

Query: 760 ANAKELASCKDIDGXLVGGASL 825
            NAK+LA  KDIDG LVGGASL
Sbjct: 214 GNAKDLAKEKDIDGFLVGGASL 235



 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 26/36 (72%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
 Frame = +3

Query: 477 KVIACIGETLEERESGKTEEVVFRQLKALV--IGHW 578
           KVIACIGE LEERE+GKT+EVVFRQ KA+   I  W
Sbjct: 121 KVIACIGEKLEEREAGKTDEVVFRQTKAIANKINSW 156


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 128 FVVGGNWKMNGDKNQINEIVNNLKKGP-LDPNVEVIVGVPAIYLSYVKTIIP 280
           F+  G W + G   + NEI  N    P +D    VI+    +Y  +   I+P
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYY-FFNLIVP 241


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 658 PVGE*QSCLYQ*P-IQVHRQAQYFPICHQWPITKAFNCLKTTSSVLPDSLSSRVSPIQAM 482
           PV   QS  YQ    QV    QY  +  Q  I++    ++    VLP++L +    +QA+
Sbjct: 655 PVIPEQSLTYQDQQYQVVSVEQYQQLKEQGQISQVGGGIQQNVEVLPENLVNAQQQVQAV 714


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +2

Query: 230 IVGVPAIYLSYVKTIIPDNVEVAAQN 307
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,194
Number of Sequences: 438
Number of extensions: 5587
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)