Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_A24
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   2.1  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.8  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   6.4  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    26   6.4  
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    26   8.4  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   8.4  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 214 IINKREIHKKARVIFFYKSAKVKKKVSNFEIVNRSKYETALPASTRVM 71
           ++N   IH + R+   +K      K + F+I+N  KY      + +V+
Sbjct: 432 VLNNYGIHNEERLSIVFKPLGASPKDTFFDIINNQKYVVNTDGTLKVV 479


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 460 TEVSWMASIMFIFAPIAVFIYGIAADKFGRKNALLCCSIPIAVG 591
           ++VSW A+   I       ++G   D +GRK  LL       +G
Sbjct: 124 SQVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIG 167


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +1

Query: 325 KHFQVLMAIIVCLPVFSY-GTAMGWISPHKALLMGEDTPSNAPVTETEVSWMASIMFIFA 501
           KHF  +    V L    Y   ++G +      L  E+T  N  + +     +  I ++  
Sbjct: 74  KHFLNVAVAGVALMSDGYCSNSIGTVITILRKLYPEETTHNKSLQD-----IGMIAYVGT 128

Query: 502 PIAVFIYGIAADKFGRKNALLCCSIPIAV 588
            +    +G  +D+FGRKN ++  +I + V
Sbjct: 129 IVGQLSFGWYSDRFGRKNGMITATIILIV 157


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 238 NTDDITAQIINKREIHK 188
           NTD+ TA++I K E HK
Sbjct: 168 NTDEATAKVIKKYEAHK 184


>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +3

Query: 378 WYRHGLDLPSQSASHGRRHTIERPRHGDGSILDGVHHVHIRTDRRLHLWHCC 533
           W R+ LD PS       R+ ++ P+H      D +    +  ++   LW  C
Sbjct: 151 WDRYDLDQPSNQDVEESRNLVQEPKHRSKK-YDRLGLDELVMEQTASLWKIC 201


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 483 HHVHIRTDRRLHLWHCC*QVRKEKCSSLLLYSDCCRL 593
           H   I++   L LWH      KEKC +LL  + C  +
Sbjct: 47  HEELIQSINLLDLWHQLIPGTKEKCLTLLSRAPCMNI 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,064
Number of Sequences: 5004
Number of extensions: 69454
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)