Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_A19
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    49   1e-06
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    48   2e-06
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   8.2  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   8.2  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +3

Query: 159 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRN 257
           + RE++VY AKLAEQAERY+EMVE MK VA  N
Sbjct: 3   NSRENSVYLAKLAEQAERYEEMVENMKKVACSN 35


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 26/39 (66%), Positives = 30/39 (76%)
 Frame = +3

Query: 159 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNEL 275
           + RED VY AKLAEQAERY+ MVE MK+VAS   +D EL
Sbjct: 4   TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQEL 39


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 276 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 154
           S+H   + +  H    P F  S    QLTLL +   YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 195 LTLLYTHYLP-FPTLWMTNEFYTN*IRIA 112
           L  L+ +YL   P LW   EFY + ++IA
Sbjct: 265 LLALWIYYLTDIPRLWQMREFYIHALKIA 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,139,792
Number of Sequences: 5004
Number of extensions: 20502
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)