Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_A05
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0080 - 28208043-28208138,28208187-28208257,28208300-282086...    29   3.8  
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718...    29   5.0  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    28   8.8  
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    28   8.8  
02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875...    28   8.8  

>11_08_0080 -
           28208043-28208138,28208187-28208257,28208300-28208603,
           28210483-28211544
          Length = 510

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 357 PAFMSASVHTPLSCEV-CSNLACMSLLCRISSSNVPSLFVRATLQPVSDTTANVAISCVK 181
           PAF+SA  +TP+S  V   N    SL  + +  +    +VRA L P    T NV +    
Sbjct: 65  PAFISAFANTPISLAVSLPNSDLPSLADKQTGLDTARAWVRANLSPYVPAT-NVTLLLAG 123

Query: 180 NSI 172
           N I
Sbjct: 124 NEI 126


>02_05_0020 +
           25070664-25070692,25070934-25071513,25071605-25071817,
           25071918-25072207,25072301-25072412,25072539-25072763,
           25072853-25073464
          Length = 686

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 356 LHSCRLRYTLRSVARSVRTWRAC 288
           LHS R+R+  R  +   RTW AC
Sbjct: 605 LHSARIRHRFRFYSHQWRTWAAC 627


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 60  PTTAWSAWTRSKDKKKFKEMSTK-KH*RKLVNLVHHKKK 173
           PT  W+AWTR +++  F  +  + K+  K+   V  K K
Sbjct: 118 PTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNK 156


>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 504 FHLYWANQGEPVYVSPALRYSTG 436
           F ++W+ +GEPV VS ALR ++G
Sbjct: 451 FQMHWS-KGEPVIVSDALRLTSG 472


>02_02_0300 -
           8746526-8747224,8749033-8749089,8749414-8749650,
           8750061-8750172,8750258-8750538,8752032-8752244,
           8753105-8753636,8753871-8753899
          Length = 719

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 356 LHSCRLRYTLRSVARSVRTWRAC 288
           LHS +L++T R  ++  RTW AC
Sbjct: 609 LHSKQLQHTFRFYSQQWRTWAAC 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,624,038
Number of Sequences: 37544
Number of extensions: 440066
Number of successful extensions: 1333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)