Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_A04
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    30   3.0  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   3.9  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   9.1  

>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -1

Query: 369 ASASEWSRSRAIIPIISCCPGSEKNTSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLH 193
           ASA  W R+       S  P +E  T+++R L G  + S    +R+LLL LVP +R+LH
Sbjct: 794 ASARRWVRA-------SVAPYAEA-TNVSRVLVGDEVIS--QANRTLLLSLVPAMRNLH 842


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 306 SEKNTSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQXKDKNMKIKTGAN 142
           S+    ++ F+ G   YS+F  H + + KLV  +  LHC  +  D  +    GAN
Sbjct: 331 SKLRVYISPFIYGTR-YSSFGRHFTKVEKLVEIVDKLHCYVEPGDTIVDFCCGAN 384


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 206 IVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE-ANITA 382
           + G S NKR + QEK   + +PL      +F SD      + +  +++ +   E ++I+ 
Sbjct: 398 VKGVSMNKRAVQQEKFSAHQVPL-----PLFISDQKAAPEVNLHLKEVTNFRLEDSDISK 452

Query: 383 GGIGFSYANIKLKSPRGSGLNYQLEIY 463
           G  G    ++   SP+ +  N+   ++
Sbjct: 453 GNSGTKEEDVNCFSPQATESNHDRTVF 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,534
Number of Sequences: 37544
Number of extensions: 314238
Number of successful extensions: 1013
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)