Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_A02
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   202   5e-53
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   202   7e-53
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   2.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  202 bits (493), Expect = 5e-53
 Identities = 102/193 (52%), Positives = 124/193 (64%)
 Frame = +2

Query: 149 LSVARPLXSVYSEKSETVQGCSQAXXXXXXXXXXXXDLVNDVHVSMSKNSRQPYCVSKEA 328
           ++ ARP  S+YS K  +V   + A            DLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRP-DLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 329 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 508
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH      
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 509 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 688
                               ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ 
Sbjct: 119 EKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYR 178

Query: 689 DILKVYKSQRLRA 727
           D++KV  S++LRA
Sbjct: 179 DVVKVANSRKLRA 191



 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 28/41 (68%), Positives = 38/41 (92%)
 Frame = +3

Query: 729 GKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVELLNV 851
           GKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE++NV
Sbjct: 192 GKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNV 232


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  202 bits (492), Expect = 7e-53
 Identities = 101/193 (52%), Positives = 124/193 (64%)
 Frame = +2

Query: 149 LSVARPLXSVYSEKSETVQGCSQAXXXXXXXXXXXXDLVNDVHVSMSKNSRQPYCVSKEA 328
           ++ ARP  S+Y+ K  +V   + A            DLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRP-DLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 329 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 508
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH      
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 509 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 688
                               ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ 
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYR 178

Query: 689 DILKVYKSQRLRA 727
           D++KV  S++LRA
Sbjct: 179 DVIKVANSRKLRA 191



 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 28/41 (68%), Positives = 38/41 (92%)
 Frame = +3

Query: 729 GKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVELLNV 851
           GKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE++NV
Sbjct: 192 GKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNV 232


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -1

Query: 236 NTXREGLGCXPAPSR---SSLNTPTXKVGLPIDSFRYFSEAIPPKYTLIAGDKDHP 78
           N   E +    APS    S LNTPT    L     RY  +   P++ +   +K HP
Sbjct: 263 NKVEEAIVSSSAPSSGVSSVLNTPTRPHALSTPRIRYGPQPTDPQFGITWHEKLHP 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,062
Number of Sequences: 5004
Number of extensions: 62595
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)