Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_A02
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 184 8e-47
07_01_0578 + 4295386-4296489,4297394-4297507 182 3e-46
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.17
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.23
08_02_1278 - 25838146-25839411 32 0.53
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 1.6
03_05_0366 - 23505755-23506441 29 3.7
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.5
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.5
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 28 8.6
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 184 bits (448), Expect = 8e-47
Identities = 92/192 (47%), Positives = 114/192 (59%)
Frame = +2
Query: 152 SVARPLXSVYSEKSETVQGCSQAXXXXXXXXXXXXDLVNDVHVSMSKNSRQPYCVSKEAG 331
+ ARPL SV + + + + D+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 332 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 511
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 512 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 691
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 692 ILKVYKSQRLRA 727
K S +RA
Sbjct: 183 AEKTKDSVAIRA 194
Score = 56.4 bits (130), Expect = 3e-08
Identities = 25/42 (59%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = +3
Query: 729 GKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVELLNV 851
GKGKMRNRR I RKGPLI++ + + +AFRN+PGV++ NV
Sbjct: 195 GKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANV 236
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 182 bits (444), Expect = 3e-46
Identities = 93/189 (49%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Frame = +2
Query: 161 RPLXSVYS-EKSETVQGCSQAXXXXXXXXXXXXDLVNDVHVSMSKNSRQPYCVSKEAGHQ 337
RPL SV + E S D+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 338 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 517
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 518 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 697
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 698 KVYKSQRLR 724
K S +R
Sbjct: 186 KAKDSVGIR 194
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/42 (59%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = +3
Query: 729 GKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVELLNV 851
GKGKMRNRR I RKGPLI++ + + +AFRN+PGV++ NV
Sbjct: 196 GKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANV 237
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 344 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 454
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 450 PPRHMLPKAP*PDLWVPPP 394
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2
Query: 673 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 566
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -2
Query: 667 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 500
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 499 DATVPAP 479
A AP
Sbjct: 134 SAPAKAP 140
>03_05_0366 - 23505755-23506441
Length = 228
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 305 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 427
P C S E + +AES TG A R R+ G T+ + + A
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTNDNDEEA 174
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 266 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 436
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 437 MCRGGRMFAPTKPWRRW 487
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 329 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 433
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 206 PAPSRSSLNTPTXKVGLPIDSFRYFSEAIPPKYTLIAGDKDHPPCHGGVKRPKI 45
P P RS TPT DS R + A PP+ ++ ++ VKRP +
Sbjct: 114 PRPPRSQQQTPTTTAAAAADS-RSPTPAAPPQTASVSQREEEKSLASVVKRPML 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,969,710
Number of Sequences: 37544
Number of extensions: 539977
Number of successful extensions: 1715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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