Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_A01
         (1686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF286472-1|AAG00551.1|  567|Homo sapiens retinitis pigmentosa GT...    34   1.3  

>AF286472-1|AAG00551.1|  567|Homo sapiens retinitis pigmentosa
           GTPase regulator protein.
          Length = 567

 Score = 34.3 bits (75), Expect = 1.3
 Identities = 32/132 (24%), Positives = 41/132 (31%), Gaps = 1/132 (0%)
 Frame = +3

Query: 498 EGREXEXKXXQXEA-GXXEXXRXXGGGXXPEXXXXKXXGXKXAEXTGARXXXAKXXXGEK 674
           EG E E +  + E  G  E     G G   E    +  G    E             GE+
Sbjct: 256 EGEEEEGEGEEEEGEGKGEEEGEEGEG---EEEGEEGEGEGEEEEGEGEGEEEGEGEGEE 312

Query: 675 XRXAXXGXKQGXGXXGERXEEXXGXXXXXEGERRXGXXEXXGGATXGXXRAXKEXGEXXX 854
                 G ++G G   E   E  G     EGE      E  G    G     +E GE   
Sbjct: 313 EEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEG 372

Query: 855 PXETAEAGGPQD 890
             E  E  G ++
Sbjct: 373 EEEEGEGEGEEE 384


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.301    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,841,607
Number of Sequences: 237096
Number of extensions: 863125
Number of successful extensions: 881
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 25485141746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)