Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P24
         (1037 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    40   4e-04
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    36   0.012
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    36   0.012
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    28   1.9  

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = +1

Query: 331 GTVFSYQVXGXXTDVSVSTRNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXT 510
           GTV    +    + V+V  +NGRVE+    +G   TPSY+  T+D ER  G+A +    +
Sbjct: 35  GTVIGIDLGTTYSCVAVM-KNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPS 92

Query: 511 NP 516
           NP
Sbjct: 93  NP 94


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 391 NGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
           N RVE+    +G  +TPSY+  T D ER  GDA +     NP
Sbjct: 21  NNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 61


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 391 NGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
           N RVE+    +G  +TPSY+  T D ER  GDA +     NP
Sbjct: 21  NNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 61


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 421 KGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
           +G  +TPS +  T+DGER  G + +     NP
Sbjct: 79  EGTRTTPSVVAFTKDGERLVGVSAKRQAVINP 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,226
Number of Sequences: 5004
Number of extensions: 15235
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)