Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_P24
(1037 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0654 - 5639419-5641449 40 0.003
05_04_0392 - 20889699-20891726 39 0.006
05_04_0052 - 17515344-17517353 39 0.006
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 36 0.070
01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819 35 0.12
03_02_0540 + 9340379-9340592,9341250-9342988 34 0.16
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 34 0.16
11_08_0075 + 28173220-28173433,28175348-28177083 33 0.28
05_05_0109 - 22454539-22456268,22457069-22457279 33 0.28
03_02_0546 - 9381989-9383733,9385838-9386054 33 0.28
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 33 0.37
03_06_0484 + 34233042-34233258,34235317-34237049 33 0.49
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 30 2.6
12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231 29 6.1
03_02_0542 - 9348126-9349585,9352433-9352655 29 6.1
>08_01_0654 - 5639419-5641449
Length = 676
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +1
Query: 331 GTVFSYQVXGXXTDVSVSTRNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXT 510
GTV + + V V RNG VE+ +G TPS++ T GER G+A +
Sbjct: 44 GTVIGIDLGTTYSCVGVY-RNGHVEIIANDQGNRITPSWVAFTDGGERLIGEAAKNQAAA 102
Query: 511 NPXK 522
NP +
Sbjct: 103 NPER 106
>05_04_0392 - 20889699-20891726
Length = 675
Score = 39.1 bits (87), Expect = 0.006
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +1
Query: 331 GTVFSYQVXGXXTDVSVSTRNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXT 510
GTV + + V V RN RVE+ +G TPS++ T GER G+A +
Sbjct: 44 GTVIGIDLGTTYSCVGVY-RNDRVEIIANDQGNRITPSWVAFTDGGERLIGEAAKNQAAA 102
Query: 511 NPXK 522
NP +
Sbjct: 103 NPER 106
>05_04_0052 - 17515344-17517353
Length = 669
Score = 39.1 bits (87), Expect = 0.006
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +1
Query: 331 GTVFSYQVXGXXTDVSVSTRNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXT 510
GTV + + V V RNG VE+ +G TPS++ T GER G+A +
Sbjct: 39 GTVIGIDLGTTYSCVGVY-RNGHVEIIANDQGNRITPSWVAFTGGGERLIGEAAKNQAAA 97
Query: 511 NPXK 522
NP +
Sbjct: 98 NPGR 101
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 35.5 bits (78), Expect = 0.070
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 328 MGTVFSYQVXGXXTDVSVSTRNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXX 507
+GTV + + V V +NG VE+ +G TPS++ T D ER G+A +
Sbjct: 32 LGTVIGIDLGTTYSCVGVY-KNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAA 89
Query: 508 TNPXK 522
NP +
Sbjct: 90 VNPER 94
>01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819
Length = 539
Score = 34.7 bits (76), Expect = 0.12
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
+NGR E+ G +TPSY T D ER GDA + NP
Sbjct: 27 QNGRAEIVTNEHGGRATPSYAAFT-DTERLVGDAAKSQASRNP 68
>03_02_0540 + 9340379-9340592,9341250-9342988
Length = 650
Score = 34.3 bits (75), Expect = 0.16
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
++ RVE+ +G +TPSY+ T D ER GDA + NP
Sbjct: 25 QHDRVEIIANDQGNRTTPSYVAFT-DSERLIGDAAKNQVAMNP 66
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 34.3 bits (75), Expect = 0.16
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
++ RVE+ +G +TPSY+ T D ER GDA + NP
Sbjct: 217 QHDRVEIIANDQGNRTTPSYVAFT-DSERLIGDAAKNQVAMNP 258
>11_08_0075 + 28173220-28173433,28175348-28177083
Length = 649
Score = 33.5 bits (73), Expect = 0.28
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
++ RVE+ +G +TPSY+ T D ER GDA + NP
Sbjct: 25 QHDRVEIIANDQGNRTTPSYVGFT-DSERLIGDAAKNQVAMNP 66
>05_05_0109 - 22454539-22456268,22457069-22457279
Length = 646
Score = 33.5 bits (73), Expect = 0.28
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
++ RVE+ +G +TPSY+ T D ER GDA + NP
Sbjct: 24 QHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 65
>03_02_0546 - 9381989-9383733,9385838-9386054
Length = 653
Score = 33.5 bits (73), Expect = 0.28
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
++ RVE+ +G +TPSY+ T D ER GDA + NP
Sbjct: 26 QHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 67
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 33.1 bits (72), Expect = 0.37
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNPXK 522
RNG V++ +G TPS++ T D ER G+A + NP +
Sbjct: 55 RNGHVDIVANDQGNRITPSWVAFTDD-ERLVGEAAKNQAALNPDR 98
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 32.7 bits (71), Expect = 0.49
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
++ RVE+ +G +TPSY+ T D ER GDA + NP
Sbjct: 26 QHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNP 67
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 367 TDVSVSTRNGR-VEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
T+ VS G+ ++ + +G +TPS + Q GER G + TNP
Sbjct: 62 TNSCVSVMEGKNPKVIENSEGTRTTPSVVAFNQKGERLVGTPAKRQAVTNP 112
>12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231
Length = 270
Score = 29.1 bits (62), Expect = 6.1
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +1
Query: 358 GXXTDVSVSTRNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
G + G+ + +G+ +TPS + T+ GER G + NP
Sbjct: 59 GTTNSAVAAMEGGKPTVITNAEGQRTTPSVVAYTKGGERLVGQIAKRQAVVNP 111
>03_02_0542 - 9348126-9349585,9352433-9352655
Length = 560
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 388 RNGRVEMXDKXKGKSSTPSYMTXTQDGERXXGDAXRXXXXTNP 516
R GRVE+ +G +TPS + T D R GDA NP
Sbjct: 28 RRGRVEVIPNDQGNLTTPSCVAFT-DTWRLIGDAALNQAAMNP 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,363
Number of Sequences: 37544
Number of extensions: 128868
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3059425352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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