Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_P21
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 32 0.55
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 31 0.96
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 31 1.7
08_02_1129 - 24513568-24514296,24515380-24515817 30 2.2
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 30 2.9
05_03_0515 + 14930736-14932697 29 3.9
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 28 9.0
04_04_0347 + 24564589-24565296 28 9.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 9.0
01_06_0570 - 30317848-30318240 28 9.0
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 32.3 bits (70), Expect = 0.55
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 305 IINEGRVEGDKYXISIHLPGYEQKDINVK 391
++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 220 VVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 31.5 bits (68), Expect = 0.96
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 630 ATCGTLTSAWRQPRRPMRSRKL*KRPRTLSTSETMRXS 743
A C TS+ R+ RRPMR+ +R RT S++ T R S
Sbjct: 40 ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPS 77
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 696 TAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVG 586
TA + +FW V +S+ LL ++ S+ + + FVG
Sbjct: 1263 TALMLGTIFWRVGHKMESSKDLLVIIGSMYAAVLFVG 1299
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 674 SSGLSPSRRQRPARCSRW*TPSLHDLHS*GSSQWALQLASC 552
+S +SP QR A CSRW PS L + + A+QL C
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 552 ARGQLQSPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMR 683
A G+ P P V SS PR C LTS +R+P P R
Sbjct: 5 AVGEATPPPGGPPSRVSVSSSSSTPRRRCAALTSRFREPASPRR 48
>05_03_0515 + 14930736-14932697
Length = 653
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 102 LCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSN-LVQRNATLGRHD 275
+C + V +P + +W YH + YV +S+ ++ S WSN L Q N
Sbjct: 312 VCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLSSCFS 371
Query: 276 EGAVVEVPQXL*TKDAWK 329
+ +V + K+ W+
Sbjct: 372 DNVFGKVMSLVGAKEFWR 389
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 609 RWSSPPRATCGTLTSAWRQPRRPMR 683
RW+ PP C T S + P RP R
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPAR 144
>04_04_0347 + 24564589-24565296
Length = 235
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 99 LLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 188
L LLAA SAA +H ++ PY HH+ P+
Sbjct: 9 LASSLLAAASAARADHHSPAYAPYPHHHAPW 39
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 536 KQPEDSKRPVAEPTETTPTNVSREEMEFTTESNVRD 643
+QP SKRP AE T TT + ++ +E ++ VRD
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRD 730
>01_06_0570 - 30317848-30318240
Length = 130
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 482 GSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEFT---TESNVRDVDV 652
G +YE DVL +P Q P D P A T T PT R + + T + ++ R VD+
Sbjct: 5 GEELYESDVL---WPDHQS-PHDVVPPTATATATAPTPARRGQQQITRHCSTASSRPVDI 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,874,170
Number of Sequences: 37544
Number of extensions: 405370
Number of successful extensions: 1275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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