Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P18
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   3.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 670 PXPGXGGGGXXPPXPPPP 723
           P PG  G G  PP PPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -2

Query: 661 PXXGPXAPXVFSRGXPPRXGXXXXPPPXGGGXXXPPPPGP 542
           P   P AP       P   G    PPP G     PPPP P
Sbjct: 742 PTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -2

Query: 661 PXXGPXAPXVFSRGXPPRXGXXXXPPPXGGGXXXPPPPGP 542
           P   P  P     G PP       PPP   G   PPPP P
Sbjct: 746 PAPIPVPPPAPIMGGPP----PPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +1

Query: 703 PPXPPPPRGXPXKXXXXXXXXXXXXXXGXXXXPGXPPPGXPPXGXXPLXPP 855
           PP PPP    P                G    P  PPPG    G  P  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPP 781


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 842 GXXPXGGXPGGGXPG 798
           G  P GG PGGG PG
Sbjct: 439 GSFPGGGFPGGGFPG 453


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 799 PGXPPPGXPPXGXXPLXPP 855
           PG PPP  PP G  P   P
Sbjct: 6   PGNPPPPPPPPGFEPPSQP 24



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 799 PGXPPPGXPPXGXXPLXPPGG 861
           P  PPPG  P    P  PP G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 670 PXPGXGGGGXXPPXPPPP 723
           P  G    G  PP PPPP
Sbjct: 295 PSSGDSANGGLPPPPPPP 312


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = +1

Query: 694 GXXPPXPPPPRGXPXKXXXXXXXXXXXXXXGXXXXPGXPPPGXPPXGXXPLXPPGGXXGX 873
           G   P PPPPR  P                     P  PPP  P     P  PP G    
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN----PPAPPPAIPGRS-APALPPLGNASR 411

Query: 874 T 876
           T
Sbjct: 412 T 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,631
Number of Sequences: 5004
Number of extensions: 16591
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)