Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P17
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    65   1e-11
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   6.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   6.3  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
 Frame = +2

Query: 110 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRXQRLDSQESRWCRGEP 286
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R   L + ++   +   
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 287 *QEGIHXSVQESKGYQKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRR 460
            +  +  +    K  QKPAK L R+   A A  R  YK +   +    YR DL K ++ R
Sbjct: 61  PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119

Query: 461 ASAILRSQRP 490
           ASAIL SQRP
Sbjct: 120 ASAILSSQRP 129


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 523 GCGCLSLFCFDGPLG 479
           GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 355 D*VFSGLLVAFAFLYTTVNPFLSGFS 278
           D V S +L AFA +  T  P+LS FS
Sbjct: 831 DSVESTILAAFALVTDTTTPYLSDFS 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,782
Number of Sequences: 5004
Number of extensions: 49405
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)