Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P17
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    29   6.0  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 41/123 (33%), Positives = 63/123 (51%)
 Frame = +2

Query: 116 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRLDSQESRWCRGEP*QE 295
           MS +L W +IRNN+AFL  +R I K FS E  N+  ++S +   L ++ +         +
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDVSAA--AK 58

Query: 296 GIHXSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 475
           G+  S +  KG  +PAK +        ++  +  V+RL K N       K   RRA+AI+
Sbjct: 59  GVVVSTKNEKG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112

Query: 476 RSQ 484
           RSQ
Sbjct: 113 RSQ 115


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 70  CEHVVXGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQC 216
           CEH+   + I   R+N+++ ELD +  QQ I   EA Y   +++  E+C
Sbjct: 275 CEHMQKQIHIANQRRNMLIEELDQN--QQSI---EASYNNRLKEMEERC 318


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 423 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 524
           +T  T  R P ++  PSS P GPSK    + P P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKPPTP 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,383
Number of Sequences: 27780
Number of extensions: 295671
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)