Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P17
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.10 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   1.2  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 420  TTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 536
            TT A  YAR+  +     ++ + P  Q++  Q QPSRNN
Sbjct: 1267 TTGAAVYARV--IAPTTITSSQSPGNQQQTIQTQPSRNN 1303


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 146 RNNNAFLVKKRNIKKPFSKEP 208
           R N+  L+KKRN   PF K P
Sbjct: 8   RINSCDLLKKRNENDPFLKRP 28


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 356 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 484
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 73  EHVVXGVEIGLNRKNVVVTEL 135
           +  V G  +G N KNV V EL
Sbjct: 243 QEAVPGDNVGFNVKNVSVKEL 263


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 73  EHVVXGVEIGLNRKNVVVTEL 135
           +  V G  +G N KNV V EL
Sbjct: 300 QEAVPGDNVGFNVKNVSVKEL 320


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 146 RNNNAFLVKKRNIKKPFSK 202
           R N+  L+KKRN   PF K
Sbjct: 129 RINSCDLLKKRNENDPFLK 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,512
Number of Sequences: 438
Number of extensions: 3442
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)