Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P15
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    29   0.92 
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   6.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   8.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   8.6  

>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -2

Query: 555 QRHSANTDTPNNQSTTLKQNSVYFIQ*IWDSSFPTTGPCPPAILTITKQYFVTSPVHSRS 376
           Q +  N  T N     L+Q S   +Q  ++   PTT P  P I  + +QY V  P    S
Sbjct: 506 QNNPVNPSTTNPFQNFLRQPSYQGMQ--FEQQQPTTIPLQPNIPVLNQQYPVMIPAMEDS 563

Query: 375 R 373
           R
Sbjct: 564 R 564


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 744 KLNCDPMXTRIKVLRFPSVPTRIPRNATTMMPKEAMSIM 628
           +L   P  TR    RFPSVP    +N+   +  E  S++
Sbjct: 282 RLPSPPQSTRPSSTRFPSVPLSDEKNSIVSVKNEEPSVI 320


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 512 VLWLFGVSVFALCLWICFEPGFNEWMRILELQK 610
           V W+ GV++ A  + +    G N+W + L+ +K
Sbjct: 274 VEWVEGVAIMAAIVIVVTVGGVNDWQKELQFKK 306


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 430 HFNNHKTIFRNEPCPFTVSIESQLVXRGDKQ 338
           H  + KTI  ++PCP T+      V R D +
Sbjct: 45  HLISIKTILTDQPCPNTIYYAKYQVQRKDNE 75


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 576 KPGSKQIQRHSANTDTPNNQST-TLKQNSVYFIQ 478
           KP S  ++ HS++TD+P + ST +  Q   YFIQ
Sbjct: 408 KP-STFVRPHSSSTDSPPSPSTPSNTQTDSYFIQ 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,421
Number of Sequences: 5004
Number of extensions: 79363
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)