Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_P14
(959 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101312-3|AAC69219.1| 83|Caenorhabditis elegans Ribosomal pro... 63 3e-10
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.099
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.099
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.099
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.40
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.40
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.40
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 32 0.53
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 4.9
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 29 4.9
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 29 4.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.9
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 6.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 6.5
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 6.5
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 6.5
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 6.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 8.6
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 8.6
>AF101312-3|AAC69219.1| 83|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 27 protein.
Length = 83
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/66 (50%), Positives = 37/66 (56%)
Frame = +1
Query: 151 HKL*AGIVPHPNSXXMDVKCPGRDKXTTXSRHXQRVVVSXGCPTSPXQPTGGRATFXEGC 330
HKL +V HPNS MDVKC G K +T H VVV GC T QPT G+A EGC
Sbjct: 19 HKL-KRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGC 77
Query: 331 XXXRKQ 348
+KQ
Sbjct: 78 SFRKKQ 83
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.7 bits (76), Expect = 0.099
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXG--PXX 927
PA PPPP P PP + R PP P + P G P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 928 XXXTPPPQXP 957
+PPP P
Sbjct: 293 RAGSPPPPPP 302
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXH-PXXTXGPXXX 930
P PPPP P PP G + R PP P P + P
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 317
Query: 931 XXTPPP 948
+PPP
Sbjct: 318 GGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.7 bits (76), Expect = 0.099
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXG--PXX 927
PA PPPP P PP + R PP P + P G P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 928 XXXTPPPQXP 957
+PPP P
Sbjct: 314 RAGSPPPPPP 323
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXH-PXXTXGPXXX 930
P PPPP P PP G + R PP P P + P
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 338
Query: 931 XXTPPP 948
+PPP
Sbjct: 339 GGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.099
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXG--PXX 927
PA PPPP P PP + R PP P + P G P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 928 XXXTPPPQXP 957
+PPP P
Sbjct: 299 RAGSPPPPPP 308
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXH-PXXTXGPXXX 930
P PPPP P PP G + R PP P P + P
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 323
Query: 931 XXTPPP 948
+PPP
Sbjct: 324 GGSPPP 329
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.40
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPPQ 951
PPPP P P PP G PP P P P PPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 952 XP 957
P
Sbjct: 788 PP 789
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXX 933
P PPPP P PPPG PP P P P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 934 XTPPPQXP 957
PP P
Sbjct: 781 KGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.40
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPPQ 951
PPPP P P PP G PP P P P PPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 952 XP 957
P
Sbjct: 788 PP 789
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXX 933
P PPPP P PPPG PP P P P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 934 XTPPPQXP 957
PP P
Sbjct: 781 KGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.40
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPPQ 951
PPPP P P PP G PP P P P PPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Query: 952 XP 957
P
Sbjct: 371 PP 372
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = +1
Query: 754 PAXXRXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXX 933
P PPPP P PPPG PP P P P
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363
Query: 934 XTPPPQXP 957
PP P
Sbjct: 364 KGGPPPPP 371
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 32.3 bits (70), Expect = 0.53
Identities = 16/64 (25%), Positives = 22/64 (34%)
Frame = +1
Query: 766 RXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPP 945
R PPP P + T P + + PP P +P + P +PP
Sbjct: 438 RVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPP 497
Query: 946 PQXP 957
P P
Sbjct: 498 PPPP 501
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +3
Query: 477 PKGTTXXXXPKXXKKEKKKXXTXXXPXPXXPXRPXRPPKXXPRXGXGPPXXXAXXGXPGP 656
PK K +K K K + P P P +P P K P P A P P
Sbjct: 1192 PKLNKKAPAEKPTEKPKPKEVSKEPPKPTEPPKPAAPKKWKPPWEDDPDEPEADFTMPAP 1251
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPPQ 951
PPPP P P P PP P P T GP PPP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP---PGRTPGPPGMPGMPPPP 320
Query: 952 XP 957
P
Sbjct: 321 PP 322
Score = 24.2 bits (50), Expect(2) = 5.8
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +3
Query: 552 PXPXXPXRPXRPPKXXPRXGXGPPXXXAXXG-XPGP 656
P P P RPP P G PP G PGP
Sbjct: 276 PMPPTPGMTPRPP-PPPSSGMWPPPPPPPPGRTPGP 310
Score = 23.0 bits (47), Expect(2) = 5.8
Identities = 14/62 (22%), Positives = 15/62 (24%)
Frame = +3
Query: 765 PXTPPXXXXXAXGXPXXXXNRXXPXXKRXXXAGTXXPAXPXHHXXPXXXXGPPXXXAXPT 944
P PP G P P G P P + PP P
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 373
Query: 945 PP 950
PP
Sbjct: 374 PP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPPQ 951
PPPP P P P PP P P T GP PPP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP---PGRTPGPPGMPGMPPPP 330
Query: 952 XP 957
P
Sbjct: 331 PP 332
Score = 24.2 bits (50), Expect(2) = 5.8
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +3
Query: 552 PXPXXPXRPXRPPKXXPRXGXGPPXXXAXXG-XPGP 656
P P P RPP P G PP G PGP
Sbjct: 286 PMPPTPGMTPRPP-PPPSSGMWPPPPPPPPGRTPGP 320
Score = 23.0 bits (47), Expect(2) = 5.8
Identities = 14/62 (22%), Positives = 15/62 (24%)
Frame = +3
Query: 765 PXTPPXXXXXAXGXPXXXXNRXXPXXKRXXXAGTXXPAXPXHHXXPXXXXGPPXXXAXPT 944
P PP G P P G P P + PP P
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 383
Query: 945 PP 950
PP
Sbjct: 384 PP 385
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/64 (23%), Positives = 21/64 (32%)
Frame = +1
Query: 766 RXPPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPP 945
R PPP P + T + + PP P +P + P +PP
Sbjct: 431 RVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPP 490
Query: 946 PQXP 957
P P
Sbjct: 491 PPPP 494
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANG-XXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPP 948
PPPP P P PPP G PP P P T P TPPP
Sbjct: 488 PPPPPM--PSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAP-----TPPP 540
Query: 949 QXP 957
P
Sbjct: 541 PPP 543
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Frame = +3
Query: 552 PXPXXPXRPXRPP--KXXPRXGXGPPXXXAXXGXPGP 656
P P P P PP P GPP G PGP
Sbjct: 217 PGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGP 253
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Frame = +3
Query: 552 PXPXXPXRPXRPP--KXXPRXGXGPPXXXAXXGXPGP 656
P P P P PP P GPP G PGP
Sbjct: 217 PGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGP 253
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Frame = +1
Query: 772 PPP---PXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTP 942
PPP P Q PQ PP G+ G + P P + P P
Sbjct: 321 PPPQGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAP 380
Query: 943 PPQ 951
PPQ
Sbjct: 381 PPQ 383
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPP 948
PP P P PPG G R PP P T P GP PP
Sbjct: 226 PPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPP----GPPGPPTRRPP 280
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 491 PXXQXQXXQKGKKKXXNPXXPRTXXTPPXXXPPKKXPP 604
P + + G P PR TPP PP + PP
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPP 161
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/68 (30%), Positives = 22/68 (32%)
Frame = -1
Query: 956 GXWGGGVXXLSXGPXVXXGXXVVXGXGGXXRXRXXXPFAPGGGXVXGXXWXXXGXXXXGG 777
G WGGG G G GG P + GGG W G GG
Sbjct: 113 GNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGG-----DWGGNGGGGRGG 167
Query: 776 GGXRXXAG 753
GG R G
Sbjct: 168 GGGRGGGG 175
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPP 948
PPPP Q P PP G PP P P P PPP
Sbjct: 201 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLP---PVGAGAPPPPPPPPPP 256
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPP 948
PPPP Q P PP G PP P P P PPP
Sbjct: 187 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLP---PVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +1
Query: 772 PPPPXXXXPXXXQXXPQTXPPPGANGXXXRXRXXPPXPXTTXHPXXTXGPXXXXXTPPP 948
PPPP Q P PP G PP P P P PPP
Sbjct: 187 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLP---PVGAGAPPPPPPPPPP 242
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.6
Identities = 28/134 (20%), Positives = 30/134 (22%), Gaps = 3/134 (2%)
Frame = +3
Query: 558 PXXPXRPXRPP--KXXPRXGXGPPXXXAXXGXPGPXXXXXXXXXXXXXXXXXXXXXXXXX 731
P P P PP K P+ GPP G PG
Sbjct: 135 PVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPA 194
Query: 732 XXXXPXXARXXPXTPPXXXXXAXGXPXXXXNRXXPXXKRXXXA-GTXXPAXPXHHXXPXX 908
P TP G P + P A G P P
Sbjct: 195 GEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPG 254
Query: 909 XXGPPXXXAXPTPP 950
GPP PP
Sbjct: 255 PDGPPGVDGQSGPP 268
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 8.6
Identities = 28/134 (20%), Positives = 30/134 (22%), Gaps = 3/134 (2%)
Frame = +3
Query: 558 PXXPXRPXRPP--KXXPRXGXGPPXXXAXXGXPGPXXXXXXXXXXXXXXXXXXXXXXXXX 731
P P P PP K P+ GPP G PG
Sbjct: 130 PVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPA 189
Query: 732 XXXXPXXARXXPXTPPXXXXXAXGXPXXXXNRXXPXXKRXXXA-GTXXPAXPXHHXXPXX 908
P TP G P + P A G P P
Sbjct: 190 GEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPG 249
Query: 909 XXGPPXXXAXPTPP 950
GPP PP
Sbjct: 250 PDGPPGADGQSGPP 263
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 8.6
Identities = 28/134 (20%), Positives = 30/134 (22%), Gaps = 3/134 (2%)
Frame = +3
Query: 558 PXXPXRPXRPP--KXXPRXGXGPPXXXAXXGXPGPXXXXXXXXXXXXXXXXXXXXXXXXX 731
P P P PP K P+ GPP G PG
Sbjct: 130 PVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPA 189
Query: 732 XXXXPXXARXXPXTPPXXXXXAXGXPXXXXNRXXPXXKRXXXA-GTXXPAXPXHHXXPXX 908
P TP G P + P A G P P
Sbjct: 190 GEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPG 249
Query: 909 XXGPPXXXAXPTPP 950
GPP PP
Sbjct: 250 PDGPPGADGQSGPP 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,708
Number of Sequences: 27780
Number of extensions: 216962
Number of successful extensions: 1056
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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