Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P10
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    92   9e-20
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    91   2e-19
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    28   2.1  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   2.8  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 92.3 bits (219), Expect = 9e-20
 Identities = 40/69 (57%), Positives = 51/69 (73%)
 Frame = +2

Query: 92  VTVXDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 271
           V+V DV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 272 IYIRSPVGV 298
           IY+R  VGV
Sbjct: 64  IYLRKQVGV 72



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 26/55 (47%), Positives = 38/55 (69%)
 Frame = +1

Query: 310 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDL 474
           K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDL
Sbjct: 77  KVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDL 131


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 39/69 (56%), Positives = 51/69 (73%)
 Frame = +2

Query: 92  VTVXDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 271
           V+V DV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 272 IYIRSPVGV 298
           IY+R  VGV
Sbjct: 64  IYLRKQVGV 72



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 26/55 (47%), Positives = 38/55 (69%)
 Frame = +1

Query: 310 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDL 474
           K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDL
Sbjct: 77  KVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDL 131


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 262 PSSYLHSLTCWSKDCXKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 402
           P+S L +  C+S       G    N ++P H+C  S   + +A + L
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQL 191


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 68  QHKARCVPVTVXDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 202
           QH  R VP+    + E   I K  AA+   T  +K PE +DL+  A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,439
Number of Sequences: 5004
Number of extensions: 37216
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)