Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P10
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    86   4e-17
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    86   4e-17

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
 Frame = +2

Query: 95  TVXDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 274
           ++ DV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 275 YIRSPVGVKTVXRSLVGAN----VMELHLHISAGH 367
           Y R P G+    + + G N    V   H   SAG+
Sbjct: 66  YFR-PAGI-GAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
 Frame = +1

Query: 310 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLXQNR 486
           K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DL +  
Sbjct: 77  KVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRIA 136

Query: 487 CPGSSKGQAA 516
               S GQ A
Sbjct: 137 TSLRSSGQQA 146


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
 Frame = +2

Query: 95  TVXDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 274
           ++ DV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 275 YIRSPVGVKTVXRSLVGAN----VMELHLHISAGH 367
           Y R P G+    + + G N    V   H   SAG+
Sbjct: 66  YFR-PAGI-GAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
 Frame = +1

Query: 310 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLXQNR 486
           K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DL +  
Sbjct: 77  KVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRIA 136

Query: 487 CPGSSKGQAA 516
               S GQ A
Sbjct: 137 TSLRSSGQQA 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,178
Number of Sequences: 27780
Number of extensions: 233450
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)