Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P08
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   3.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.7  

>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 136 AHIKQINKYFDIFPFANVTYAFDRAV 59
           AH++ +N YF    FA+V   F+R++
Sbjct: 77  AHVEHLNPYFHAEAFASVNDCFERSL 102


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 521  FAYNVLKTKTYKQFARLQLISQTLFSRVYFD--NKLEAGSSIALQFDVDEVKAQSSSGD 351
            F +N      YK   R+      + + + FD  N+L++G+  A+ +D+  +++  S  D
Sbjct: 1912 FVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSD 1970


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,639
Number of Sequences: 5004
Number of extensions: 42631
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)