Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P06
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   140   3e-34
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.31 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.93 
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    28   2.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   3.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   5.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   8.7  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  140 bits (339), Expect = 3e-34
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 1/223 (0%)
 Frame = +3

Query: 201 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 380
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 381 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 557
           + A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 558 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQ 737
             L R   +        IG   P+F +A Q+++ IL    ++    ++YNKF S VS+  
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFET 202

Query: 738 SDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLXYA 866
               LYT K+I  +  L+AY+  D +V Q   EF+ A+ +  A
Sbjct: 203 VMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSA 244


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +3

Query: 399 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 563
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 564 LQRLYGKHIISVA 602
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 642  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 821
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 822  QSY 830
            QS+
Sbjct: 2516 QSF 2518


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/80 (21%), Positives = 34/80 (42%)
 Frame = +3

Query: 645 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQ 824
           +L  A+ +      +   I+N+FKS+ +  Q   P   +       +   + +   D L+
Sbjct: 53  ELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLK 112

Query: 825 SYTEFSLASLLXYAPEXXRL 884
           S  E +++ L+    E  RL
Sbjct: 113 SIAEATISGLIPTKEEAERL 132


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 750 GASRTGRTIPQT*TCYK*SFRNQTRILR*EWQW 652
           GAS+T    P + +C    F N+   L+ EW W
Sbjct: 45  GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -1

Query: 650 QLTCVQESRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 477
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F+Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 432 AMTSDRGLCGAVHTGVSKVIRNRLSE 509
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,928,858
Number of Sequences: 5004
Number of extensions: 86987
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)