Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_P03
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    94   2e-20
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    28   1.6  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   3.7  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.7  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   4.9  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 1/179 (0%)
 Frame = +2

Query: 179 GKMGGLXKDIHPSDLLAVAAKESFKAGNVAPALVDTVNIGQVXXLXXTSXGGXSPRHAXL 358
           G  GG    +  + L ++A K + +  N+ P+ VD V +G V      + G    R   L
Sbjct: 17  GSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVS---ANLGQNPARQCAL 73

Query: 359 KSGVPQEKPALGVNRLCGSGFQAVINSAQDILTGTAQISLXGGTXNMSAVPFVVRNTRFG 538
            +G+P+      VN++C SG +A I  AQ I+TG A+I + GGT +MS  P+     RFG
Sbjct: 74  GAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAPYYAPKNRFG 133

Query: 539 VPLGVNIPFEDSLSAGSL-DTYCNYTMPQTAENLAEKYXLKRGEVDQFSLQSQXEMENS 712
              G N+   D L    L D Y    M   AE  AE++ + R   D F++ S    +N+
Sbjct: 134 AKYG-NVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISSYKRAQNA 191



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 133 VNKGIFIVAAKRTPLRKNGGSVERHSSIRLTS 228
           VN  ++IV+A RTP+   GGS     + +L S
Sbjct: 2   VNTEVYIVSAVRTPMGSFGGSFASLPATKLGS 33


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 441 ALLMTAWNPDPHNLLTPSAGFSC 373
           ++   +W+PD    +T SAG+SC
Sbjct: 233 SIFSISWSPDSSQFVTSSAGYSC 255


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 147 LHSRGEEDPASEKWGVCXKTFIHP 218
           LH RG +    E WG+C + F+HP
Sbjct: 211 LHLRGIQLWGGESWGMCAR-FLHP 233


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 27  FNREPXNDSGFLCWPGRRARCTRTIQL 107
           F+ EP ++     +P R+AR TRTIQL
Sbjct: 436 FDLEPYSEVFTASYPRRQARRTRTIQL 462


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 160 AKRTPLRKNGGSVERHSSIR 219
           A RT LRK  G +E HS+++
Sbjct: 170 ASRTSLRKGAGELETHSAVK 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,075
Number of Sequences: 5004
Number of extensions: 60247
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)