Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_O24
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   4.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.9  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   6.5  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    26   8.6  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   8.6  

>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +1

Query: 118 NAR-TRMTSIDYTKVTIKEKELYT-PPXGRSSLCIVXWFNNELQVCGSVSGR*SRPH*TS 291
           NAR T + S   T  + + ++  + PP GR+S   V       Q+   +SGR  RP   +
Sbjct: 269 NARATAIASSSNTAASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGN 328

Query: 292 LLSQ-ISRIDWRRQTGRDRGPAVLSAAGQTRQDI 390
           +  + I+ +    QT R +    LS     ++ +
Sbjct: 329 IREEDINTVQTIMQTSRAQAIQALSQTNDVQRAV 362


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 679 VVAKNRTGKSNFITSIRETLKTHY 750
           +V +N +GKSNF  +IR  L   Y
Sbjct: 30  IVGRNGSGKSNFFAAIRFVLSDAY 53


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 462 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGG 349
           HGP  + A       +    L  S +   LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 251 EVSVADSPDLTEPPYYLKFPG 313
           E+S+ +  DL    YYL+FPG
Sbjct: 442 ELSIGEISDLFYTTYYLEFPG 462


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 822 ASXWK*AAARGQHERAAQTHDXVSVVSLQCLSDGRDKVGLA 700
           A  W   AARG     + T+D  +V S++ + + R + G+A
Sbjct: 24  AKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVRGGVA 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,096
Number of Sequences: 5004
Number of extensions: 68455
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)