Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_O23
         (1022 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.0  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   5.3  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    29   7.1  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
 Frame = +3

Query: 819  PXFLTPXPXXTKXXXPGPXXP--LPXKXEKXVXXFXPXXPXPXXXGXXPXXPGXXGAXSP 992
            P    P P  T    P P  P   P           P  P P   G  P  PG  G   P
Sbjct: 261  PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP-GRTPGPPGMPGMPPP 319

Query: 993  PPKXLWG 1013
            PP   +G
Sbjct: 320  PPPSRFG 326


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
 Frame = +3

Query: 819  PXFLTPXPXXTKXXXPGPXXP--LPXKXEKXVXXFXPXXPXPXXXGXXPXXPGXXGAXSP 992
            P    P P  T    P P  P   P           P  P P   G  P  PG  G   P
Sbjct: 271  PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP-GRTPGPPGMPGMPPP 329

Query: 993  PPKXLWG 1013
            PP   +G
Sbjct: 330  PPPSRFG 336


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
 Frame = +3

Query: 780 FSPPXXX--PXXXAPPXFLTPXPXXTKXXXPGPXXPLPXKXEKXVXXFXPXXPXPXXXGX 953
           F+PP     P   APP      P       PG   P P         + P    P   G 
Sbjct: 378 FAPPPQSGPPGAFAPPPSAFGAPQGP--GGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGP 435

Query: 954 XPXXPGXXGAXSPPP 998
            P  PG  GA  PPP
Sbjct: 436 PP--PGGPGAYGPPP 448


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter than
            wild-typeprotein 3 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 20/76 (26%), Positives = 22/76 (28%)
 Frame = +3

Query: 786  PPXXXPXXXAPPXFLTPXPXXTKXXXPGPXXPLPXKXEKXVXXFXPXXPXPXXXGXXPXX 965
            PP   P    PP    P         PGP        +  V    P  P P      P  
Sbjct: 147  PPPKPPCQKCPPGPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGL-PGPPGPSGPQGAPGV 205

Query: 966  PGXXGAXSPPPKXLWG 1013
            PG  G    P K + G
Sbjct: 206  PGEKGPTGEPGKVING 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,798,351
Number of Sequences: 27780
Number of extensions: 177057
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2699257404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)